Browse Element(s) Details


OsAffx.13395.1.S1_x_at

Description tigr:9631.m04643
TID=OsAffx.13395.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative homeodomain protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4773011/11Associated with HOX family protein
LOC_Os01g610801/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47702OsAffx.1626.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.28851.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.2.S1_at4/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.1.S1_s_at2/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.20341.2.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22674.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.24556.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22673.2.S1_x_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.9154.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47720OsAffx.22674.1.S1_at11/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_x_at2/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_at1/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47730OsAffx.13395.1.S1_x_at11/113+27000580..27002608Associated with HOX family protein
LOC_Os03g47740Os.7976.1.S1_a_at11/113+27006206..27012857Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13395.1.S1_x_at--887--3891Chr03:27002008..27002032 (25 bp)
CTGGAGAGCCGGCACGAGCACTACT
LOC_Os03g47730
OsAffx.13395.1.S1_x_at--153--9871Chr03:27001918..27001942 (25 bp)
TACACGGCGCTCATGGCGCAGGCCA
LOC_Os03g47730
OsAffx.13395.1.S1_x_at--137--891Chr03:27001899..27001923 (25 bp)
AGGCCATGTCGCACCACTTCGGCAG
LOC_Os03g47730
OsAffx.13395.1.S1_x_at--883--311Chr03:27001861..27001885 (25 bp)
ATACTGCGCAAGCTCAGGCTCCACG
LOC_Os03g47730
OsAffx.13395.1.S1_x_at--821--7591Chr03:27001635..27001659 (25 bp)
GGGCATGGCTCTTCGACCATTTCCT
LOC_Os03g47730
OsAffx.13395.1.S1_x_at--503--6911Chr03:27000831..27000855 (25 bp)
GTATCCGAATGACAACGAGAAGCTC
LOC_Os03g47730
OsAffx.13395.1.S1_x_at--319--1451Chr03:27000814..27000838 (25 bp)
AGAAGCTCATGCTGGCCGTGGCTAC
LOC_Os03g47730
OsAffx.13395.1.S1_x_at--811--4231Chr03:27000799..27000823 (25 bp)
CCGTGGCTACGGGTCTAAGCAGAAC
LOC_Os03g47730
OsAffx.13395.1.S1_x_at--542--7151Chr03:27000698..27000811 (25 bp)
GTCTAAGCAGAACCCAAATATCGAA
LOC_Os03g47730
OsAffx.13395.1.S1_x_at--598--2571Chr03:27000675..27000699 (25 bp)
AACTGGTTCATCAACGCGCGAGTGC
LOC_Os03g47730
OsAffx.13395.1.S1_x_at--198--8752Chr01:35676078..35676306 (25 bp)
TGTACAACGACGAGTTCGACGACGA
LOC_Os01g61080
Target Sequence 
CTGGAGAGCCGGCACGAGCACTACTTCGGGGAGCTGAGGCGGGTGTCGGCGTCGTTCGAGCCGGCGCTGGGCGCCGGCGC
CACGGCCGGGTACACGGCGCTCATGGCGCAGGCCATGTCGCACCACTTCGGCAGCCTGCGCCGCGCCATACTGCGCAAGC
TCAGGCTCCACGCCGCCGCGGCGGCCAGGACGAGGTCGGCGTTGCTGCGGCTGGCCCGGGACGCCATGGAGGAGGACGAC
GAGGGCGACGGCGAGGAGGAGGAGGAGGTGGTGAACAGGGTGGTCCGGCGGACGAAGCAGGCGGCGGCGGCGAGGGCGGA
GCAGGCGTGGAGGCCGCTCCGGGGATTGCCGGAGGACGCCGTGGGCGTGCTCCGGGCATGGCTCTTCGACCATTTCCTCC
ACCCGTATCCGAATGACAACGAGAAGCTCATGCTGGCCGTGGCTACGGGTCTAAGCAGAACCCAAATATCGAACTGGTTC
ATCAACGCGCGAGTGCGGCTGTGGAAGCCCATGGTGGAGGAGATGTACAACGACGAGTTCGACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13395.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis