Browse Element(s) Details


OsAffx.13408.1.S1_x_at

Description tigr:9631.m04726
TID=OsAffx.13408.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Core-2I-Branching enzyme, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4856010/11BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os01g104401/11glycosyltransferase family 14 protein, putative, expressed
LOC_Os10g300801/11secondary cell wall-related glycosyltransferase family 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48490OsAffx.3553.1.S1_x_at11/113+27601413..27608908bHLH family protein, putative, expressed
LOC_Os03g48504NANA3+27609659..27609847NA
LOC_Os03g48520OsAffx.3553.2.A1_at11/113+27611598..27612350PB1 domain containing protein
LOC_Os03g48529NANA3+27612932..27613077NA
LOC_Os03g48540Os.17998.1.S1_at10/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48540Os.5235.1.S1_x_at3/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48550OsAffx.30226.3.S1_at11/113+27623825..27624707hypothetical protein
LOC_Os03g48560OsAffx.13408.1.S1_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560OsAffx.13408.1.S1_x_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560Os.46676.1.A1_x_at1/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48570OsAffx.13409.1.S1_at11/113+27640988..27642323hypothetical protein
LOC_Os03g48580OsAffx.25625.1.S1_at11/113+27650540..27651675hypothetical protein
LOC_Os03g48590OsAffx.13410.1.S1_x_at11/113+27652296..27653808preprotein translocase, SecY subunit containing protein
LOC_Os03g48600Os.48278.2.S1_x_at10/113+27654519..27659664auxin-regulated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13408.1.S1_x_at--972--6171Chr03:27628657..27628681 (25 bp)
GAGGAGCTTGCCGACAGCATTCAAG
LOC_Os03g48560
OsAffx.13408.1.S1_x_at--199--1551Chr03:27628672..27628692 (21 bp)
AGCATTCAAGCTCTTCACTGGGTCA
LOC_Os03g48560
OsAffx.13408.1.S1_x_at--107--3771NONE
CTCTTCACTGGGTCAGCGTGGATGG
NONE
OsAffx.13408.1.S1_x_at--342--891Chr03:27630276..27630300 (25 bp)
AGGCCGTTCGTGGAGTACCTGATCT
LOC_Os03g48560
OsAffx.13408.1.S1_x_at--727--5752Chr03:27630323..27630347 (25 bp)
GACGGTGCTCATGTACTACGCCAAC
LOC_Os03g48560
OsAffx.13408.1.S1_x_at--905--5131Chr03:27630388..27630412 (25 bp)
GCAACGCCGGCGAGTTCAGGAACAC
LOC_Os03g48560
OsAffx.13408.1.S1_x_at--1120--4612Chr10:15294660..15294680 (21 bp)
GCGAGTTCAGGAACACCACGGTGAA
LOC_Os10g30080
OsAffx.13408.1.S1_x_at--122--7771Chr03:27630416..27630440 (25 bp)
GGTGAACAGCGACCTCCACTTCATC
LOC_Os03g48560
OsAffx.13408.1.S1_x_at--1153--4491Chr03:27630636..27630660 (25 bp)
GCCGATGGCGACAGCAACAGTACTA
LOC_Os03g48560
OsAffx.13408.1.S1_x_at--558--2491Chr03:27630651..27630675 (25 bp)
AACAGTACTACTACCGGCGGCGCCG
LOC_Os03g48560
OsAffx.13408.1.S1_x_at--731--9091Chr03:27630763..27630787 (25 bp)
TGCTGTCGGAGGAGAATTTCCGGCC
LOC_Os03g48560
Target Sequence 
GAGGAGCTTGCCGACAGCATTCAAGCTCTTCACTGGGTCAGCGTGGATGGTGCTATCGAGGCCGTTCGTGGAGTACCTGA
TCTGGGGGTGGGACAACCTCCCGCGGACGGTGCTCATGTACTACGCCAACTTCATCTCGTCGCCGGAGGGCTACTTCCAC
ACCGTCGCCTGCAACGCCGGCGAGTTCAGGAACACCACGGTGAACAGCGACCTCCACTTCATCTCCTGGGACAACCCGCC
CATGCAGCACCCGCACTACCTCGCCGACGCTGACTGGGGCCCCATGCTCGCCAGCGGCGCCCCCTTCGCCCGCAAGTTCC
GCCGCGACGACTCCGTTCTCGACCGCATCGACGCCGACCTCCTCTCCCGCCGCCCCGGCATGGTCGCCCCCGGCGCCTGG
TGCGGCGCCGCCGCCGCCGCCGATGGCGACAGCAACAGTACTACTACCGGCGGCGCCGTCGACCCCTGCGGCGTTGCCGG
CGGCGGCGGCGAGGCGGTGCGGCCGGGGCCTGGCGCCGAGCGGCTGCAGCGGCTGGTGGCGTCGCTGCTGTCGGAGGAGA
ATTTCCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13408.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis