Browse Element(s) Details


OsAffx.13410.1.S1_x_at

Description tigr:9631.m04729
TID=OsAffx.13410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=preprotein translocase, SecY subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4859011/11preprotein translocase, SecY subunit containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48560OsAffx.13408.1.S1_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560OsAffx.13408.1.S1_x_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560Os.46676.1.A1_x_at1/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48570OsAffx.13409.1.S1_at11/113+27640988..27642323hypothetical protein
LOC_Os03g48580OsAffx.25625.1.S1_at11/113+27650540..27651675hypothetical protein
LOC_Os03g48590OsAffx.13410.1.S1_x_at11/113+27652296..27653808preprotein translocase, SecY subunit containing protein
LOC_Os03g48600Os.48278.2.S1_x_at10/113+27654519..27659664auxin-regulated protein, putative, expressed
LOC_Os03g48610OsAffx.13411.1.S1_at11/113+27664651..27669349galactosyltransferase family protein, putative, expressed
LOC_Os03g48626Os.57328.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.37537.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_a_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.2.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_at9/113+27672927..27678227expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009306biological_processprotein secretion
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13410.1.S1_x_at--149--7311Chr03:27652784..27652808 (25 bp)
GTGCTGCTCTCCTCGGCGGTCTCGT
LOC_Os03g48590
OsAffx.13410.1.S1_x_at--22--9531Chr03:27652756..27652780 (25 bp)
TCTACGTCGTCTCCCAGGCGCTGTA
LOC_Os03g48590
OsAffx.13410.1.S1_x_at--804--9411Chr03:27652708..27652732 (25 bp)
TCGTCGACCTGCTCGGCAAGTGGAC
LOC_Os03g48590
OsAffx.13410.1.S1_x_at--85--9231Chr03:27652600..27652624 (25 bp)
TCCACGCGGCGATGTACGTGGCGTT
LOC_Os03g48590
OsAffx.13410.1.S1_x_at--626--751Chr03:27652589..27652613 (25 bp)
ATGTACGTGGCGTTCGTGCTCGCGG
LOC_Os03g48590
OsAffx.13410.1.S1_x_at--514--4571Chr03:27652561..27652585 (25 bp)
GCGCGGCGCTGTCCAGGGCGTGGGT
LOC_Os03g48590
OsAffx.13410.1.S1_x_at--311--8331Chr03:27652498..27652522 (25 bp)
GGCTCCGGGAGCAGCAGATGGTGAT
LOC_Os03g48590
OsAffx.13410.1.S1_x_at--949--8071Chr03:27652443..27652467 (25 bp)
GGAGCTGGAGCGGTACATCCCGGCG
LOC_Os03g48590
OsAffx.13410.1.S1_x_at--465--8351Chr03:27652406..27652430 (25 bp)
GGCGGCGTGTGCGTCGGCGCGCTGA
LOC_Os03g48590
OsAffx.13410.1.S1_x_at--193--631Chr03:27652337..27652361 (25 bp)
ATGCTGCTCGCGGTGACCACCGTGT
LOC_Os03g48590
OsAffx.13410.1.S1_x_at--1067--7751Chr03:27652326..27652350 (25 bp)
GGTGACCACCGTGTACCAGTGCTAC
LOC_Os03g48590
Target Sequence 
GTGCTGCTCTCCTCGGCGGTCTCGTCGCTCTACGTCGTCTCCCAGGCGCTGTACCGCCGGTTCGGCGGGAGCCTCCTCGT
CGACCTGCTCGGCAAGTGGACGCCGGACGCCGCCGTCCCCGTCGGCGGCATCGCCTACTACGTGACCGCGCCGGCGAGCG
CGGCGAGCGCGGCGGCGAACCCGCTCCACGCGGCGATGTACGTGGCGTTCGTGCTCGCGGCGTGCGCGGCGCTGTCCAGG
GCGTGGGTGGTGGTGTCCGGGTCGTCGTCCCGGGACGTGGCGAGGCGGCTCCGGGAGCAGCAGATGGTGATGCCGGGGAT
GCGGGAGGCGAGCATGCAGAGGGAGCTGGAGCGGTACATCCCGGCGGCGGCGGCGCTCGGCGGCGTGTGCGTCGGCGCGC
TGACGGTGGCCGCCGACCTGATGGGCGCCGTCGGCTCCGGCGCCGGGATGCTGCTCGCGGTGACCACCGTGTACCAGTGC
TAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13410.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis