Browse Element(s) Details


OsAffx.13421.1.S1_at

Description tigr:9631.m04807
TID=OsAffx.13421.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4931011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein
LOC_Os03g49250Os.53012.1.S1_at11/113+27995291..27997255LysM domain containing protein, expressed
LOC_Os03g49260Os.18598.1.S1_at11/113+27998774..28002905Lipoxygenase 1, putative, expressed
LOC_Os03g49270Os.23084.1.S1_at11/113+28003740..28004353expressed protein
LOC_Os03g49280OsAffx.25639.1.S1_at11/113+28007599..28007869hypothetical protein
LOC_Os03g49290NANA3+28010599..28011371hypothetical protein
LOC_Os03g49300NANA3+28013198..28013491hypothetical protein
LOC_Os03g49310OsAffx.13421.1.S1_at11/113+28016438..28018603expressed protein
LOC_Os03g49310Os.50022.1.S1_at8/113+28016438..28018603expressed protein
LOC_Os03g49330OsAffx.22947.1.S1_x_at11/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.2.S1_x_at4/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.3.S1_x_at4/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.5.S1_x_at3/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49340OsAffx.1319.1.S1_at1/113+28033052..28036135transposon protein, putative, Mariner sub-class
LOC_Os03g49350OsAffx.23548.1.S1_x_at1/113+28039240..28043641Lipoxygenase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13421.1.S1_at--981--511Chr03:28017592..28017616 (25 bp)
ATCGAGTCTAGAACGAGCCAAGCTC
LOC_Os03g49310
OsAffx.13421.1.S1_at--264--5931Chr03:28017567..28017591 (25 bp)
GAGCAGCTCCAGTTTTCGAGTTTTT
LOC_Os03g49310
OsAffx.13421.1.S1_at--1117--8231Chr03:28016883..28016907 (25 bp)
GGCACTATGGCCTTGCTATCGAGGA
LOC_Os03g49310
OsAffx.13421.1.S1_at--790--8431Chr03:28016875..28016899 (25 bp)
GGCCTTGCTATCGAGGACGAACTTA
LOC_Os03g49310
OsAffx.13421.1.S1_at--986--4071Chr03:28016858..28016882 (25 bp)
CGAACTTAGCCTTGGAAGAGACGTT
LOC_Os03g49310
OsAffx.13421.1.S1_at--860--8551Chr03:28016796..28016820 (25 bp)
TGGAGGTTAAGCATGAGCTACCCAT
LOC_Os03g49310
OsAffx.13421.1.S1_at--1014--9071Chr03:28016753..28016777 (25 bp)
TGCTAGAAGCGGCTCAGATCCTCAC
LOC_Os03g49310
OsAffx.13421.1.S1_at--206--5171Chr03:28016649..28016673 (25 bp)
GCAAGCGGGAATGGCTTCTCCAAGT
LOC_Os03g49310
OsAffx.13421.1.S1_at--567--10591Chr03:28016634..28016658 (25 bp)
TTCTCCAAGTCTCCGAGAGGCGAGG
LOC_Os03g49310
OsAffx.13421.1.S1_at--1005--8991Chr03:28016576..28016600 (25 bp)
TGAAGTCCGCCCAGGCATTTCATGT
LOC_Os03g49310
OsAffx.13421.1.S1_at--561--191Chr03:28016560..28016584 (25 bp)
ATTTCATGTGGATTTGGCTGCCGGC
LOC_Os03g49310
Target Sequence 
ATCGAGTCTAGAACGAGCCAAGCTCGAGCAGCTCCAGTTTTCGAGTTTTTTGACAGCCCTACGGCCGGGTCGGCTGCAAG
ATGTGTTGGGGGCGGAGGGGCACTATGGCCTTGCTATCGAGGACGAACTTAGCCTTGGAAGAGACGTTGGCAGTGTTGAA
TGCTTGGGGAAGATACCGAGGTCGATGGAGGTTAAGCATGAGCTACCCATGAAGGAAGACGGGTACGGTGCTAGAAGCGG
CTCAGATCCTCACCGGCGAGCTCCGCCTCCCCTCTCGTCCATGACCCTCCGCTTCTCACCGGCGAGCTCCTTCGAGGCGC
GGGGTAGGAGTAGCAAGCGGGAATGGCTTCTCCAAGTCTCCGAGAGGCGAGGGGTGGGCTTAGGGTTGGGGGAGGCCGGA
GCCGGTGAAGTCCGCCCAGGCATTTCATGTGGATTTGGCTGCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis