Browse Element(s) Details


OsAffx.13519.1.S1_x_at

Description tigr:9631.m05600
TID=OsAffx.13519.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative lipid acyl hydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5708011/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57050OsAffx.10424.1.S1_at11/113+32462620..32463780expressed protein
LOC_Os03g57060OsAffx.13518.1.S1_x_at11/113+32465121..32465438expressed protein
LOC_Os03g57070Os.26836.1.S1_a_at11/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57070Os.26836.4.S1_x_at10/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57080OsAffx.13519.1.S1_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57080OsAffx.13519.1.S1_x_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57090OsAffx.22655.1.S1_at10/113+32490276..32493417transmembrane ARV1-like family protein, putative
LOC_Os03g57100Os.7300.1.S1_at11/113+32493480..32499105Serologically defined breast cancer antigen NY-BR-84, putative, expressed
LOC_Os03g57110Os.20638.1.S2_at11/113+32499285..32504041expressed protein
LOC_Os03g57110Os.20638.1.S1_at11/113+32499285..32504041expressed protein
LOC_Os03g57120Os.141.1.S1_at11/113+32505395..32508261Ferredoxin-NADP reductase, root isozyme, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13519.1.S1_x_at--637--7311Chr03:32480677..32480701 (25 bp)
GTGCTCAACAACAAGCGCGAGTTCC
LOC_Os03g57080
OsAffx.13519.1.S1_x_at--596--8371Chr03:32480641..32480665 (25 bp)
GGCGTCGAGGACCTCCTGGTCATCT
LOC_Os03g57080
OsAffx.13519.1.S1_x_at--776--491Chr03:32480614..32480638 (25 bp)
ATCGGCAGCGGCGAGTGCGACAACC
LOC_Os03g57080
OsAffx.13519.1.S1_x_at--219--4471Chr03:32480569..32480593 (25 bp)
GCCTCGACATCCGAGATCGTCAGGA
LOC_Os03g57080
OsAffx.13519.1.S1_x_at--619--4071Chr03:32480558..32480582 (25 bp)
CGAGATCGTCAGGATCGCCGCCGAA
LOC_Os03g57080
OsAffx.13519.1.S1_x_at--917--7231Chr03:32480404..32480554 (25 bp)
GTCGCCGACATGGTGGATCAAGCAG
LOC_Os03g57080
OsAffx.13519.1.S1_x_at--808--7951Chr03:32480390..32480414 (25 bp)
GGATCAAGCAGTGGCCATGGCGTTC
LOC_Os03g57080
OsAffx.13519.1.S1_x_at--743--3491Chr03:32480375..32480399 (25 bp)
CATGGCGTTCGGACATAATAGGACA
LOC_Os03g57080
OsAffx.13519.1.S1_x_at--538--271Chr03:32480358..32480382 (25 bp)
ATAGGACAAACAACTACATCCGTAT
LOC_Os03g57080
OsAffx.13519.1.S1_x_at--238--2211Chr03:32480353..32480373 (21 bp)
ACAACTACATCCGTATACAGGCGAT
LOC_Os03g57080
OsAffx.13519.1.S1_x_at--947--1091Chr03:32480062..32480086 (25 bp)
AGTGGTTCGCGCACGAGCTCGTCAA
LOC_Os03g57080
Target Sequence 
GTGCTCAACAACAAGCGCGAGTTCCCTCTCGCCGCCGGCGTCGAGGACCTCCTGGTCATCTCCATCGGCAGCGGCGAGTG
CGACAACCGCCCCACCGGTGGCGCCGCCGCCTCGACATCCGAGATCGTCAGGATCGCCGCCGAAGGCGTCGCCGACATGG
TGGATCAAGCAGTGGCCATGGCGTTCGGACATAATAGGACAAACAACTACATCCGTATACAGGCGATGGGGTCGCCGCGG
GCGAGCCGAGGAGGGATGAGATGCGGCGGCGGCGGCGGCGGCGATGGCGCGGGGTGGGGCGTGGCGGAGGAGATGCTGTC
GCAGAAGAACGTGGAGTCGGTGCTGTTCCGGGGGAAGAAGCTGGCGGAGCAGACGAACGCCGAGAAGCTGGAGTGGTTCG
CGCACGAGCTCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13519.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis