Browse Element(s) Details


OsAffx.13530.1.S1_at

Description tigr:9631.m05660
TID=OsAffx.13530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative glutamate carboxypeptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5766011/11glutamate carboxypeptidase II, putative, expressed
LOC_Os01g661501/11expressed protein
LOC_Os10g346701/11prefoldin subunit 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57600Os.47326.1.S1_at11/113+32771579..32773664expressed protein
LOC_Os03g57610OsAffx.14941.1.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.4.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.1.S1_at10/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.5.S1_at9/113+32775141..32778122hypothetical protein
LOC_Os03g57620OsAffx.13528.1.S1_at10/113+32784843..32786914hypothetical protein
LOC_Os03g57630OsAffx.25743.1.S1_at11/113+32788229..32788910hypothetical protein
LOC_Os03g57640Os.54936.1.S1_at11/113+32790378..32791699PrMC3, putative, expressed
LOC_Os03g57660Os.18145.1.S1_x_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57660OsAffx.13530.1.S1_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57670NANA3+32806571..32807937LOB domain protein 4, putative
LOC_Os03g57680Os.15575.1.S1_at5/113+32808297..32816140Aldehyde oxidase 1, putative, expressed
LOC_Os03g57690Os.15575.1.S1_at11/113+32818329..32825391Aldehyde oxidase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0006508biological_processproteolysis
GO:0009640biological_processphotomorphogenesis
GO:0009910biological_processnegative regulation of flower development
GO:0005739cellular_componentmitochondrion
GO:0016272cellular_componentprefoldin complex
GO:0008233molecular_functionpeptidase activity
GO:0009980molecular_functionglutamate carboxypeptidase activity
GO:0016805molecular_functiondipeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13530.1.S1_at--850--8571Chr03:32804981..32805005 (25 bp)
TGGTTCAAGCATCTGGTGAGCCTTA
LOC_Os03g57660
OsAffx.13530.1.S1_at--96--7771Chr03:32804995..32805019 (25 bp)
GGTGAGCCTTAAGTGGGTCAGCCAT
LOC_Os03g57660
OsAffx.13530.1.S1_at--61--7831Chr03:32805010..32805034 (25 bp)
GGTCAGCCATGAACCCACTTATAGG
LOC_Os03g57660
OsAffx.13530.1.S1_at--338--9711Chr03:32805035..32805059 (25 bp)
TCAAAATAAGCAGGTCTGCGGCTTA
LOC_Os03g57660
OsAffx.13530.1.S1_at--723--1033Chr10:18146405..18146443 (25 bp)
AGGTCTGCGGCTTATTTTGGCCTAT
LOC_Os10g34670
OsAffx.13530.1.S1_at--302--7893Chr04:28034476..28034495 (20 bp)
GGTTAGCCACTTACACTCTTAAGCC
NONE
OsAffx.13530.1.S1_at--359--4471Chr03:32805107..32805131 (25 bp)
GCCTCCCGCTATTCATAAGTCATAA
LOC_Os03g57660
OsAffx.13530.1.S1_at--385--2411Chr03:32805153..32805177 (25 bp)
AAAAAATGTTGTGCGTGACCACGCT
LOC_Os03g57660
OsAffx.13530.1.S1_at--50--4671Chr03:32805165..32805189 (25 bp)
GCGTGACCACGCTTTTATATTTCTT
LOC_Os03g57660
OsAffx.13530.1.S1_at--475--1711Chr03:32805170..32805194 (25 bp)
ACCACGCTTTTATATTTCTTGCTAG
LOC_Os03g57660
OsAffx.13530.1.S1_at--600--191Chr03:32805183..32805207 (25 bp)
ATTTCTTGCTAGATGTACTCGCCTC
LOC_Os03g57660
Target Sequence 
TGGTTCAAGCATCTGGTGAGCCTTAAGTGGGTCAGCCATGAACCCACTTATAGGTCAAAATAAGCAGGTCTGCGGCTTAT
TTTGGCCTATAAGTGGGTTTCGCGGGTTAGCCACTTACACTCTTAAGCCTCCCGCTATTCATAAGTCATAAGTCATAACC
AAATTTAGAAAAAAAAAATGTTGTGCGTGACCACGCTTTTATATTTCTTGCTAGATGTACTCGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis