Browse Element(s) Details


OsAffx.13723.1.S1_at

Description tigr:9632.m00727
TID=OsAffx.13723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g292241/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29190Os.38751.1.A1_at3/114+17114505..17121751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29190OsAffx.8469.1.S1_x_at1/114+17114505..17121751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29190OsAffx.8847.1.S1_x_at1/114+17114505..17121751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29190OsAffx.27810.1.S1_x_at1/114+17114505..17121751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29190OsAffx.8338.1.S1_x_at1/114+17114505..17121751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29200NANA4+17124049..17126547hypothetical protein
LOC_Os04g29210OsAffx.26224.2.S1_x_at11/114+17131805..17133641plant-specific FAD-dependent oxidoreductase family protein
LOC_Os04g29210OsAffx.26224.2.S1_at9/114+17131805..17133641plant-specific FAD-dependent oxidoreductase family protein
LOC_Os04g29224OsAffx.25936.1.S1_s_at6/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29224OsAffx.25936.7.S1_s_at5/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29224OsAffx.13723.1.S1_at1/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29224OsAffx.25936.2.S1_x_at1/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29240NANA4+17151958..17152251transposon protein, putative, unclassified
LOC_Os04g29250Os.55711.1.S1_at3/114+17156339..17157967retrotransposon protein, putative, unclassified
LOC_Os04g29260OsAffx.3942.1.S1_at10/114+17158312..17159397hypothetical protein
LOC_Os04g29270OsAffx.25007.2.S1_s_at8/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29270OsAffx.25007.2.S1_at7/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29270OsAffx.25007.1.S1_at4/114+17160605..17167528retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13723.1.S1_at--487--8552Chr04:4324773..4324797 (25 bp)
TGGAGAGAGCGAGTGTGGCGGCGGC
NONE
OsAffx.13723.1.S1_at--604--6011Chr04:4324920..4324940 (21 bp)
GAGAGTGACCTCACCTGTGAAAGGC
NONE
OsAffx.13723.1.S1_at--841--6111Chr04:4324920..4324942 (23 bp)
GAGTGACCTCACCTGTGAAAGGCGC
NONE
OsAffx.13723.1.S1_at--626--1091Chr04:4324920..4324943 (24 bp)
AGTGACCTCACCTGTGAAAGGCGCC
NONE
OsAffx.13723.1.S1_at--1109--7371Chr04:4324920..4324944 (25 bp)
GTGACCTCACCTGTGAAAGGCGCCA
NONE
OsAffx.13723.1.S1_at--979--9671Chr04:4324926..4324950 (25 bp)
TCACCTGTGAAAGGCGCCAACTCTA
NONE
OsAffx.13723.1.S1_at--892--8671Chr04:4324931..4324955 (25 bp)
TGTGAAAGGCGCCAACTCTAGAGCC
NONE
OsAffx.13723.1.S1_at--733--7351Chr04:4324932..4324956 (25 bp)
GTGAAAGGCGCCAACTCTAGAGCCG
NONE
OsAffx.13723.1.S1_at--445--8971Chr04:4324933..4324957 (25 bp)
TGAAAGGCGCCAACTCTAGAGCCGT
NONE
OsAffx.13723.1.S1_at--20--4392Chr04:4324941..4324965 (25 bp)
GCCAACTCTAGAGCCGTCACAGGTG
NONE
OsAffx.13723.1.S1_at--49--4517Chr07:7931645..7931712 (25 bp)
GCCGTCACAGGTGGCCTTACCTGTG
NONE
Target Sequence 
TGGAGAGAGCGAGTGTGGCGGCGGCGGTCGAGAGAGTGACCTCACCTGTGAAAGGCGCCAACTCTAGAGCCGTCACAGGT
GGCCTTACCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis