Browse Element(s) Details


OsAffx.13726.1.S1_x_at

Description tigr:9632.m00743
TID=OsAffx.13726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0829011/11Zinc finger, C2H2 type family protein
LOC_Os08g448303/11zinc finger family protein, putative, expressed
LOC_Os12g072802/11Zinc finger, C2H2 type family protein, expressed
LOC_Os03g622301/11zinc finger protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08250OsAffx.13724.1.S1_at11/114+4388708..4390024hypothetical protein
LOC_Os04g08260OsAffx.13725.1.S1_at11/114+4391286..4391534hypothetical protein
LOC_Os04g08270Os.361.1.S1_at7/114+4393170..4406037limit dextrinase, putative, expressed
LOC_Os04g08280Os.55383.1.S1_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.55383.1.S1_x_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.47999.3.S1_x_at1/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08290OsAffx.13726.1.S1_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08290OsAffx.13726.1.S1_x_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08300NANA4+4420768..4420983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08310Os.18527.1.S1_at11/114+4424010..4428768expressed protein
LOC_Os04g08320Os.355.1.S1_at11/114+4429062..4431113integral membrane HRF1 family protein, putative, expressed
LOC_Os04g08330Os.6733.1.S1_at11/114+4433438..4437038expressed protein
LOC_Os04g08340Os.51302.1.A1_at11/114+4439840..4442494signal peptidase I family protein, expressed
LOC_Os04g08340Os.53378.1.S1_s_at1/114+4439840..4442494signal peptidase I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13726.1.S1_x_at--964--1751Chr04:4414119..4414143 (25 bp)
ACCTGCTGGCGAGGTACACGCACTA
LOC_Os04g08290
OsAffx.13726.1.S1_x_at--443--7832Chr08:28023186..28023209 (24 bp)
GGTACACGCACTACTGCCAGGTGTG
LOC_Os08g44830
OsAffx.13726.1.S1_x_at--182--4614Chr12:3580542..3581011 (25 bp)
GCGACGCCAACCTGCGGATGCACAT
LOC_Os12g07280
OsAffx.13726.1.S1_x_at--657--4153Chr12:3581018..3581037 (20 bp)
CGCGCGCACGGCGACGAGTACAAGA
LOC_Os12g07280
OsAffx.13726.1.S1_x_at--386--911Chr04:4413967..4413991 (25 bp)
AGGCGGTGCAGCTACTCGTGCCCCG
LOC_Os04g08290
OsAffx.13726.1.S1_x_at--299--8171Chr04:4413927..4413951 (25 bp)
GGAACAGGCGGCACCCGCGGTTCCA
LOC_Os04g08290
OsAffx.13726.1.S1_x_at--289--1791Chr04:4413915..4413939 (25 bp)
ACCCGCGGTTCCAGGCGCTGAAGTC
LOC_Os04g08290
OsAffx.13726.1.S1_x_at--761--7451Chr04:4413886..4413910 (25 bp)
GTGTGCGCGAAGAACCATTACCGGC
LOC_Os04g08290
OsAffx.13726.1.S1_x_at--139--5871Chr04:4413860..4413884 (25 bp)
GAGCCACTGCCCGAAGATGTACGTG
LOC_Os04g08290
OsAffx.13726.1.S1_x_at--261--1991Chr04:4413774..4413798 (25 bp)
ACTGCGGCGAGCTCCGATGGCTCTG
LOC_Os04g08290
OsAffx.13726.1.S1_x_at--553--951Chr04:4413723..4413747 (25 bp)
AGGACAAGCTCATGGGCCACGTCGC
LOC_Os04g08290
Target Sequence 
ACCTGCTGGCGAGGTACACGCACTACTGCCAGGTGTGCGGGAAGGGGTTCAAGCGCGACGCCAACCTGCGGATGCACATG
CGCGCGCACGGCGACGAGTACAAGACGGCGGCGGCGCTGACGAGCACCGGCGCCGGCATGAGGGCGGCGGCGAGGCGGTG
CAGCTACTCGTGCCCCGCGGAGGGGTGCCGGTGGAACAGGCGGCACCCGCGGTTCCAGGCGCTGAAGTCGGTGGTGTGCG
CGAAGAACCATTACCGGCGGAGCCACTGCCCGAAGATGTACGTGTGCGGGCGGTGCGGCGGCAAGCAGTTCGCCGTGCTC
TCCGACCTCCGCACCCACGAGAAGCACTGCGGCGAGCTCCGATGGCTCTGCTCCTGCGGCACCTTCTTCTCCCGCAAGGA
CAAGCTCATGGGCCACGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13726.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis