Browse Element(s) Details


OsAffx.13762.1.S1_at

Description tigr:9632.m00965
TID=OsAffx.13762.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1091010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10850NANA4+5863657..5869766retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10860OsAffx.24317.6.S1_x_at7/114+5870695..5873243transposon protein, putative, unclassified
LOC_Os04g10860OsAffx.12663.1.S1_at1/114+5870695..5873243transposon protein, putative, unclassified
LOC_Os04g10870OsAffx.25970.2.S1_s_at11/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.2.S1_at11/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.2.S1_x_at9/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.1.S1_at3/114+5874430..5876117hypothetical protein
LOC_Os04g10880OsAffx.21755.1.S1_x_at2/114+5879059..5882459hypothetical protein
LOC_Os04g10880OsAffx.10222.1.S1_x_at2/114+5879059..5882459hypothetical protein
LOC_Os04g10880Os.45902.1.A1_x_at1/114+5879059..5882459hypothetical protein
LOC_Os04g10890OsAffx.25972.1.S1_at11/114+5884795..5886768Zinc knuckle family protein
LOC_Os04g10900NANA4+5888237..5889715retrotransposon protein, putative, unclassified
LOC_Os04g10910OsAffx.13762.1.S1_at10/114+5891722..5894579hypothetical protein
LOC_Os04g10924OsAffx.25973.1.S1_at11/114+5900306..5904584hypothetical protein
LOC_Os04g10924OsAffx.13763.1.S1_at6/114+5900306..5904584hypothetical protein
LOC_Os04g10924OsAffx.16205.1.S1_at2/114+5900306..5904584hypothetical protein
LOC_Os04g10940OsAffx.25974.1.S1_at11/114+5911009..5911683hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13762.1.S1_at--1162--4211Chr04:5894047..5894069 (23 bp)
CCGACATCGTTCACAGGATCAGGGT
LOC_Os04g10910
OsAffx.13762.1.S1_at--666--3311NONE
CACAGGATCAGGGTCATGTACTTTT
NONE
OsAffx.13762.1.S1_at--211--7131Chr04:5892409..5892433 (25 bp)
GTCATGTACTTTTGATGGCGAGCTT
LOC_Os04g10910
OsAffx.13762.1.S1_at--299--10591Chr04:5892385..5892404 (20 bp)
TTCTCGAGGGTCTCTTGGTGAGGTA
LOC_Os04g10910
OsAffx.13762.1.S1_at--263--7811Chr04:5892272..5892396 (25 bp)
GGTCTCTTGGTGAGGTACATCAGGA
LOC_Os04g10910
OsAffx.13762.1.S1_at--187--2091Chr04:5892256..5892280 (25 bp)
ACATCAGGAGATGTGTGTCACCAGA
LOC_Os04g10910
OsAffx.13762.1.S1_at--161--5971Chr04:5892226..5892250 (25 bp)
GAGAAGCTCCAGACACTAAGTACCG
LOC_Os04g10910
OsAffx.13762.1.S1_at--899--1411Chr04:5892216..5892240 (25 bp)
AGACACTAAGTACCGCCTGGAGACC
LOC_Os04g10910
OsAffx.13762.1.S1_at--326--971Chr04:5892187..5892211 (25 bp)
AGGACCTCAAGCTATTGCCATCAAA
LOC_Os04g10910
OsAffx.13762.1.S1_at--46--3171Chr04:5892163..5892187 (25 bp)
AATTGCTCCAAAACATTTCATCCCC
LOC_Os04g10910
OsAffx.13762.1.S1_at--244--7711Chr04:5892123..5892147 (25 bp)
GGGTGCTGGCATACCAAATGGACAA
LOC_Os04g10910
Target Sequence 
CCGACATCGTTCACAGGATCAGGGTCATGTACTTTTGATGGCGAGCTTGAGGTTCTCGAGGGTCTCTTGGTGAGGTACAT
CAGGAGATGTGTGTCACCAGAGGAGAGAGAAGCTCCAGACACTAAGTACCGCCTGGAGACCCCCGAGGACCTCAAGCTAT
TGCCATCAAAATTGCTCCAAAACATTTCATCCCCTCCCACATTGGCAAGGGGTGCTGGCATACCAAATGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis