Browse Element(s) Details


OsAffx.14061.1.S1_at

Description tigr:9632.m02940
TID=OsAffx.14061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3098010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30930OsAffx.3961.1.S1_at11/114+18302966..18306772NB-ARC domain containing protein
LOC_Os04g30940OsAffx.32166.1771.S1_s_at1/114+18307939..18309523hypothetical protein
LOC_Os04g30950OsAffx.14058.1.S1_at10/114+18312977..18313812hypothetical protein
LOC_Os04g30960NANA4+18314970..18315230hypothetical protein
LOC_Os04g30970OsAffx.27200.1.S1_at1/114+18315647..18315886hypothetical protein
LOC_Os04g30980OsAffx.14061.1.S1_at10/114+18318084..18320399hypothetical protein
LOC_Os04g30990Os.35344.18.S1_x_at10/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990Os.35344.3.S1_x_at9/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990OsAffx.22940.5.S1_x_at3/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g31000Os.38167.1.S1_at11/114+18333037..18343551expressed protein
LOC_Os04g31000OsAffx.8735.1.A1_at1/114+18333037..18343551expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14061.1.S1_at--1095--4411Chr04:18320345..18320369 (25 bp)
GCCATGATGGTGTCGTACTGCGCCG
LOC_Os04g30980
OsAffx.14061.1.S1_at--603--811Chr04:18320339..18320363 (25 bp)
ATGGTGTCGTACTGCGCCGCCTGGC
LOC_Os04g30980
OsAffx.14061.1.S1_at--521--4191Chr04:18320266..18320290 (25 bp)
CCGCGAGGTTCATGGACGACGTCGC
LOC_Os04g30980
OsAffx.14061.1.S1_at--824--2711Chr04:18320172..18320195 (24 bp)
AAGCAGATGGCCATCCTCAACCAGC
LOC_Os04g30980
OsAffx.14061.1.S1_at--773--551Chr04:18319689..18320183 (25 bp)
ATCCTCAACCAGCTCGGTGTATACG
LOC_Os04g30980
OsAffx.14061.1.S1_at--175--1711Chr04:18319682..18319704 (23 bp)
ACCAGCTCGGTGTATACGACGCCTA
LOC_Os04g30980
OsAffx.14061.1.S1_at--363--9951Chr04:18319668..18319692 (25 bp)
TACGACGCCTACACACATGCTAAAA
LOC_Os04g30980
OsAffx.14061.1.S1_at--813--591Chr04:18319653..18319676 (24 bp)
ATGCTAAAAAGGACTACTACGTGAC
LOC_Os04g30980
OsAffx.14061.1.S1_at--306--5691NONE
GACTACTACGTGACGGGAGTCCCAG
NONE
OsAffx.14061.1.S1_at--344--7651Chr04:18319068..18319092 (25 bp)
GGGAGTCCCAGTGAGAGCGAAACAA
LOC_Os04g30980
OsAffx.14061.1.S1_at--81--7711Chr04:18318271..18318295 (25 bp)
GGGTCCTGCTGTACCACCTGGCGAG
LOC_Os04g30980
Target Sequence 
GCCATGATGGTGTCGTACTGCGCCGCCTGGCTCGTCGACCTCGCGCTCATCGGCTCCCAGGCGGCCGCCGACGAGGAGGC
CGCGAGGTTCATGGACGACGTCGCCGGCGAGCTCCGCCGCCGCGGCGGCGTCGGGGAGGACGAGGACGAGGGCGAGGTCG
AGATGGCCATCGCCAAGCAGATGGCCATCCTCAACCAGCTCGGTGTATACGACGCCTACACACATGCTAAAAAGGACTAC
TACGTGACGGGAGTCCCAGTGAGAGCGAAACAACGGGCGGCGGCCCCGGCGGCGGCGCCGGCGCTGGAGAAGGTGGTGAT
CGCGGTCGCCGCCGGCGGGGTCCTGCTGTACCACCTGGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis