Browse Element(s) Details


OsAffx.14084.3.S1_at

Description tigr:9632.m03069
TID=OsAffx.14084.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g322108/11hypothetical protein
LOC_Os04g321902/11Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32140OsAffx.3973.1.S1_x_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32140OsAffx.3973.1.S1_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32150Os.50800.1.S1_at10/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32150OsAffx.24935.1.S1_at2/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32160OsAffx.14084.1.S1_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.1.S1_x_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.2.S1_x_at4/114+19102332..19105288hypothetical protein
LOC_Os04g32170OsAffx.26280.1.S1_at10/114+19105894..19106217hypothetical protein
LOC_Os04g32180OsAffx.3974.1.S1_at9/114+19107044..19109678hypothetical protein
LOC_Os04g32190OsAffx.14084.2.S1_x_at11/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.1.S1_x_at3/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.3.S1_at2/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32200OsAffx.26280.1.S1_at11/114+19116418..19116834hypothetical protein
LOC_Os04g32210OsAffx.14084.3.S1_at8/114+19118698..19120791hypothetical protein
LOC_Os04g32210OsAffx.14084.2.S1_x_at1/114+19118698..19120791hypothetical protein
LOC_Os04g32220OsAffx.14085.1.S1_at11/114+19124640..19127844hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_x_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.2.S1_x_at1/114+19130448..19132134hypothetical protein
LOC_Os04g32240OsAffx.14087.1.S1_at11/114+19133328..19134860expressed protein
LOC_Os04g32250OsAffx.14084.4.S1_at11/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.2.S1_x_at3/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.1.S1_x_at2/114+19136087..19139757hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_x_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.2.S1_x_at3/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.1.S1_x_at1/114+19141693..19144833hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14084.3.S1_at--540--6711Chr04:19119306..19119330 (25 bp)
GTTCGGCAGCGCTGTGGCGCCTCCT
LOC_Os04g32210
OsAffx.14084.3.S1_at--628--7251Chr04:19119368..19119392 (25 bp)
GTCCTGCCTCGCAGAGCAAGCGGAA
LOC_Os04g32210
OsAffx.14084.3.S1_at--231--3831Chr04:19119371..19119395 (25 bp)
CTGCCTCGCAGAGCAAGCGGAAGAA
LOC_Os04g32210
OsAffx.14084.3.S1_at--357--4531Chr04:19119579..19119603 (25 bp)
GCACGAAGACGCGCGGAAGGACTTC
LOC_Os04g32210
OsAffx.14084.3.S1_at--350--8911Chr04:19119605..19119629 (25 bp)
TGACGCCCTTGGCTTCCGTCGAGGA
LOC_Os04g32210
OsAffx.14084.3.S1_at--1009--3551NONE
CATCAGCAGGTGTTTTGGTTATGAT
NONE
OsAffx.14084.3.S1_at--390--3412Chr04:19120150..19120170 (21 bp)
CAGCAGGTGTTTTGGTTATGATCAA
LOC_Os04g32210
OsAffx.14084.3.S1_at--1134--5012Chr04:19120150..19120172 (23 bp)
GCAGGTGTTTTGGTTATGATCAATT
LOC_Os04g32210
OsAffx.14084.3.S1_at--60--7891Chr04:19120159..19120180 (22 bp)
GGTTATGATCAATTTCTGATGGCTG
LOC_Os04g32210
OsAffx.14084.3.S1_at--814--351NONE
ATCAATTTCTGATGGCTGAAGGATC
NONE
OsAffx.14084.3.S1_at--328--3071NONE
AATTTCTGATGGCTGAAGGATCTGA
NONE
Target Sequence 
GTTCGGCAGCGCTGTGGCGCCTCCTCCTTCGCCGCGGGGGATTCCGATGGTGGCGGGGCCGCGTCCTGCCTCGCAGAGCA
AGCGGAAGAAGCCGAACGTCGCGCCGCCGCAGCAGCAGAAGATTCAGGGCTTCGGCGGGGCCGGGGCTGGAGCTGGACCG
GTGCCGGTGTCTTCCTCGGCGCGCGCGATGGCGGCGGTGGCGGAGAAGGCGGCAGCTGCAGAGACTGAGGATGAGGCGCG
GGCGAGGGAGCGCGCGGCGGCGGAGCAGATCGCGCACGAAGACGCGCGGAAGGACTTCGTGACGCCCTTGGCTTCCGTCG
AGGACGCCATCAGCAGGTGTTTTGGTTATGATCAATTTCTGATGGCTGAAGGATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14084.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis