Browse Element(s) Details


OsAffx.14087.1.S1_at

Description tigr:9632.m03072
TID=OsAffx.14087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3224011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32180OsAffx.3974.1.S1_at9/114+19107044..19109678hypothetical protein
LOC_Os04g32190OsAffx.14084.2.S1_x_at11/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.1.S1_x_at3/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.3.S1_at2/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32200OsAffx.26280.1.S1_at11/114+19116418..19116834hypothetical protein
LOC_Os04g32210OsAffx.14084.3.S1_at8/114+19118698..19120791hypothetical protein
LOC_Os04g32210OsAffx.14084.2.S1_x_at1/114+19118698..19120791hypothetical protein
LOC_Os04g32220OsAffx.14085.1.S1_at11/114+19124640..19127844hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_x_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.2.S1_x_at1/114+19130448..19132134hypothetical protein
LOC_Os04g32240OsAffx.14087.1.S1_at11/114+19133328..19134860expressed protein
LOC_Os04g32250OsAffx.14084.4.S1_at11/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.2.S1_x_at3/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.1.S1_x_at2/114+19136087..19139757hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_x_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.2.S1_x_at3/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.1.S1_x_at1/114+19141693..19144833hypothetical protein
LOC_Os04g32270Os.15712.2.S1_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_x_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_a_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32280OsAffx.26281.1.S1_at10/114+19158732..19159319hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14087.1.S1_at--220--5951Chr04:19134338..19134362 (25 bp)
GAGAAAAGGTGAACGGCCTTCTACG
LOC_Os04g32240
OsAffx.14087.1.S1_at--359--7071Chr04:19134346..19134370 (25 bp)
GTGAACGGCCTTCTACGGGTCCTCG
LOC_Os04g32240
OsAffx.14087.1.S1_at--542--1911Chr04:19134360..19134384 (25 bp)
ACGGGTCCTCGCGAAGCCAACGGAG
LOC_Os04g32240
OsAffx.14087.1.S1_at--138--8031Chr04:19134384..19134408 (25 bp)
GGAGACGGCAAAGCCTGGCGACGAC
LOC_Os04g32240
OsAffx.14087.1.S1_at--240--8951Chr04:19134468..19134492 (25 bp)
TGACGGCGGCTTCCGGCGCAAAAGA
LOC_Os04g32240
OsAffx.14087.1.S1_at--129--4591Chr04:19134710..19134734 (25 bp)
GAATCGGAGGCGGTTTAGCTTAGGG
LOC_Os04g32240
OsAffx.14087.1.S1_at--564--9591Chr04:19134725..19134749 (25 bp)
TAGCTTAGGGTTCACCGGAAAATAG
LOC_Os04g32240
OsAffx.14087.1.S1_at--308--7891Chr04:19134733..19134757 (25 bp)
GGTTCACCGGAAAATAGCAGCTCGA
LOC_Os04g32240
OsAffx.14087.1.S1_at--71--291Chr04:19134746..19134770 (25 bp)
ATAGCAGCTCGAAACCGCGTCGATT
LOC_Os04g32240
OsAffx.14087.1.S1_at--66--4011Chr04:19134761..19134785 (25 bp)
CGCGTCGATTCCACGCGATTTAGGG
LOC_Os04g32240
OsAffx.14087.1.S1_at--755--6171Chr04:19134806..19134830 (25 bp)
GAGGAGATCGTAGGGAATCCGTTTT
LOC_Os04g32240
Target Sequence 
GAGAAAAGGTGAACGGCCTTCTACGGGTCCTCGCGAAGCCAACGGAGGAGACGGCAAAGCCTGGCGACGACGGGAGGGGC
GGCAAGGCTTCGCCGGAGATCAAAACACGGCGACGGCTCGGCCTTCACGGTGACGGCGGCTTCCGGCGCAAAAGAACGGG
TGGACGAGGTAGAGCTCGGCCTTGCGGAGCCGTGGGAGGTGGCGCCGCAGGAGTACGTCGGCCGAGGCGGCGGCTAGGGG
CGGCAGGAGCGACCGCCGGCGGCAAGAGAGAAATGGCTAGCGCGGGGAGAGGCGGCGGCTAGGGCACGGGAGCTCGAGCA
AAGGAGGGGAAAGAGAATCGGAGGAGGGGAGAGATCGGTGCGGATTTGAGGGGAATCGGAGGCGGTTTAGCTTAGGGTTC
ACCGGAAAATAGCAGCTCGAAACCGCGTCGATTCCACGCGATTTAGGGGGGTTTTTTTGGATAAGATAGAGGAGATCGTA
GGGAATCCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis