Browse Element(s) Details


OsAffx.14130.1.S1_at

Description tigr:9632.m03292
TID=OsAffx.14130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3428011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34240OsAffx.26320.1.S1_x_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240OsAffx.26320.1.S1_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240Os.47290.1.S1_at10/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34250OsAffx.3994.1.S1_at11/114+20554733..20557334D-mannose binding lectin family protein, expressed
LOC_Os04g34260OsAffx.447.1.S1_at3/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260Os.46715.1.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260OsAffx.22947.2.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34270Os.49208.1.S1_at11/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34270Os.15523.1.S1_at1/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34280OsAffx.14130.1.S1_at11/114+20577517..20577999expressed protein
LOC_Os04g34290OsAffx.26321.1.S1_at11/114+20581578..20584028D-mannose binding lectin family protein, expressed
LOC_Os04g34300OsAffx.26322.1.S1_at11/114+20591822..20594248D-mannose binding lectin family protein
LOC_Os04g34309NANA4+20595451..20596078NA
LOC_Os04g34320OsAffx.26323.1.S1_at11/114+20597959..20600264S-locus glycoprotein family protein
LOC_Os04g34330OsAffx.14131.1.S1_at11/114+20602696..20605300D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14130.1.S1_at--1132--2271Chr04:20577547..20577571 (25 bp)
AAATCCTCCACGACAGTGGTGCTGG
LOC_Os04g34280
OsAffx.14130.1.S1_at--411--1351Chr04:20577578..20577602 (25 bp)
AGAGATTGGGTCGTGCGTCTTACCA
LOC_Os04g34280
OsAffx.14130.1.S1_at--1138--7191Chr04:20577590..20577614 (25 bp)
GTGCGTCTTACCAGGCGCCCAACGA
LOC_Os04g34280
OsAffx.14130.1.S1_at--811--512Chr12:8730004..8730024 (21 bp)
ATCGACGAGGTCACGCTCCAGGTCT
NONE
OsAffx.14130.1.S1_at--645--1031Chr04:20577724..20577748 (25 bp)
AGGTCTAGGGCTCCGCATCGGCTTA
LOC_Os04g34280
OsAffx.14130.1.S1_at--35--4811Chr04:20577738..20577762 (25 bp)
GCATCGGCTTACCAGTTTGCCGTCG
LOC_Os04g34280
OsAffx.14130.1.S1_at--343--5151Chr04:20577766..20577790 (25 bp)
GCAACACGGCTGACGGCGCTACGAG
LOC_Os04g34280
OsAffx.14130.1.S1_at--337--8071Chr04:20577832..20577856 (25 bp)
GGAGCTTGGGCCTCATGTTGCCTGT
LOC_Os04g34280
OsAffx.14130.1.S1_at--256--4771Chr04:20577877..20577901 (25 bp)
GCTCGGCCCAAAATCTCCGGGAGAT
LOC_Os04g34280
OsAffx.14130.1.S1_at--1156--1711Chr04:20577926..20577950 (25 bp)
ACCAGCTCGGAGTATCGTATCGTGT
LOC_Os04g34280
OsAffx.14130.1.S1_at--1016--10131Chr04:20577938..20577962 (25 bp)
TATCGTATCGTGTAGGAATAAGTCT
LOC_Os04g34280
Target Sequence 
AAATCCTCCACGACAGTGGTGCTGGTGCGTGAGAGATTGGGTCGTGCGTCTTACCAGGCGCCCAACGACGAGAGCTACGG
CCGCGCCGCCGCGCGACAAGCATACCACACCGACGAGGTCCCCCCCTCCGCCGCGAACGCCGATCTCAGCACGCCGCCAT
CGACGAGGTCACGCTCCAGGTCTAGGGCTCCGCATCGGCTTACCAGTTTGCCGTCGCCTGCAACACGGCTGACGGCGCTA
CGAGGACGAGGCAATGGGGGAACACGGGCGGCGGAACCGAGAGATGGAGCTTGGGCCTCATGTTGCCTGTTGGGCCTTGG
GTTCAGGGCCGCTCGGCCCAAAATCTCCGGGAGATCAGCGAGGGGCCGTGCAGGCCTCCACCAGCTCGGAGTATCGTATC
GTGTAGGAATAAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis