Browse Element(s) Details


OsAffx.14145.1.S1_at

Description tigr:9632.m03386
TID=OsAffx.14145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3521010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35170Os.23819.1.S1_s_at11/114+21186131..21189779expressed protein
LOC_Os04g35180Os.54106.1.S1_at10/114+21189911..21192157co-chaperone GrpE family protein, expressed
LOC_Os04g35190Os.38242.1.S1_at11/114+21193582..21198485F-box domain containing protein, expressed
LOC_Os04g35200NANA4+21199819..21200915hypothetical protein
LOC_Os04g35210OsAffx.14145.1.S1_at10/114+21211096..21214650Leucine Rich Repeat family protein, expressed
LOC_Os04g35220Os.48068.1.S1_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35220Os.48068.1.S1_x_at11/114+21215084..21218002Transcription termination factor nusG family protein, expressed
LOC_Os04g35230OsAffx.14146.1.S1_at11/114+21221128..21224489hypothetical protein
LOC_Os04g35240Os.10746.1.S1_a_at11/114+21227131..21232574Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os04g35250OsAffx.14147.1.S1_at11/114+21236828..21238342GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14145.1.S1_at--793--871Chr04:21213244..21213268 (25 bp)
ATGGCCCGTTGCATCTGGAGTAAAG
LOC_Os04g35210
OsAffx.14145.1.S1_at--263--6091Chr04:21213261..21213285 (25 bp)
GAGTAAAGGTTCTCTCCAGTACAGT
LOC_Os04g35210
OsAffx.14145.1.S1_at--789--9211Chr04:21213275..21213299 (25 bp)
TCCAGTACAGTGGTTCCTTCCAAAA
LOC_Os04g35210
OsAffx.14145.1.S1_at--754--10651Chr04:21213288..21213312 (25 bp)
TTCCTTCCAAAATCTGCAGCACCTG
LOC_Os04g35210
OsAffx.14145.1.S1_at--136--3651Chr04:21213420..21213444 (25 bp)
CTTCGTGCTGGACGGAGATTACCCA
LOC_Os04g35210
OsAffx.14145.1.S1_at--909--6551Chr04:21213436..21213460 (25 bp)
GATTACCCAGAGCAAATAACCGTCG
LOC_Os04g35210
OsAffx.14145.1.S1_at--1148--1751Chr04:21213454..21213478 (25 bp)
ACCGTCGAAGGTGTAGCATTCCCGA
LOC_Os04g35210
OsAffx.14145.1.S1_at--860--9131Chr04:21213515..21213539 (25 bp)
TGCGGCAGATTTGCGACGTCGAGTT
LOC_Os04g35210
OsAffx.14145.1.S1_at--878--6051Chr04:21213535..21213559 (25 bp)
GAGTTCAAGATGGTGGCTCCCGCGC
LOC_Os04g35210
OsAffx.14145.1.S1_at--669--9031Chr04:21213722..21213746 (25 bp)
TGCACTCGCGCTACTACAGGAAGAA
LOC_Os04g35210
OsAffx.14145.1.S1_at--1132--8311NONE
GGCTCCGTCCTCAGTGGAGATTTCA
NONE
Target Sequence 
ATGGCCCGTTGCATCTGGAGTAAAGGTTCTCTCCAGTACAGTGGTTCCTTCCAAAATCTGCAGCACCTGCACCTGCGCAG
CTGCCCAAGGCTCCAGTTCGTGCTCCCGGTGTGGGCCTCCTCCTTCCCGGACCTGAAAACCCTCCACGTCATCCACTGCA
GCAACCTCCACAACATCTTCGTGCTGGACGGAGATTACCCAGAGCAAATAACCGTCGAAGGTGTAGCATTCCCGAAGCTA
ACCACCATCCACCTGCACGACCTCCCGATGCTGCGGCAGATTTGCGACGTCGAGTTCAAGATGGTGGCTCCCGCGCTCGA
GACCATCAAGATCAGGGGATGCTGGGGCCTGCGCCGGCTGCCGGCCGTCGCTGCGGATGGACCGAAGCCGGCCGTGGAGA
TCGAGAAGGACGTGTGGGACGCGCTGGAGTGGGACGGGGTGGAAGCCGACCACCACCCTTCCCTCTTCCAGGCGCCGGTG
CACTCGCGCTACTACAGGAAGAAGCTGCCCAGGGGCTCCGTCCTCAGTGGAGATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis