Browse Element(s) Details


OsAffx.14202.1.S1_at

Description tigr:9632.m03730
TID=OsAffx.14202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3938011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39330OsAffx.14199.1.S1_at10/114+23193937..23195374hypothetical protein
LOC_Os04g39340NANA4+23197922..23198374hypothetical protein
LOC_Os04g39350Os.12082.1.S1_at11/114+23203407..23204235heavy metal-associated domain containing protein, expressed
LOC_Os04g39360OsAffx.14201.1.S1_at11/114+23208927..23209592heavy metal-associated domain containing protein, expressed
LOC_Os04g39370OsAffx.4029.1.S1_at9/114+23211046..23212874heavy metal-associated domain containing protein
LOC_Os04g39370OsAffx.17908.1.S1_x_at1/114+23211046..23212874heavy metal-associated domain containing protein
LOC_Os04g39380OsAffx.14202.1.S1_at11/114+23216654..23217200expressed protein
LOC_Os04g39390Os.31312.5.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39390Os.31312.2.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39400OsAffx.22492.1.S1_at1/114+23230939..23237094retrotransposon protein, putative, unclassified
LOC_Os04g39400OsAffx.22492.1.S1_x_at1/114+23230939..23237094retrotransposon protein, putative, unclassified
LOC_Os04g39410Os.51054.1.S1_at11/114+23238894..23242141pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14202.1.S1_at--296--8151Chr04:23216906..23216930 (25 bp)
GGACAAGCTGGAGGTCGTCGGAGTC
LOC_Os04g39380
OsAffx.14202.1.S1_at--596--471Chr04:23216857..23216881 (25 bp)
ATCTGCCTGCGCAAGAAGGTGTGCT
LOC_Os04g39380
OsAffx.14202.1.S1_at--656--4471Chr04:23216853..23216877 (25 bp)
GCCTGCGCAAGAAGGTGTGCTACGC
LOC_Os04g39380
OsAffx.14202.1.S1_at--792--2891Chr04:23216785..23216809 (25 bp)
AAGGAGCCGGAATGCAAGCCGTGCT
LOC_Os04g39380
OsAffx.14202.1.S1_at--729--5871Chr04:23216782..23216806 (25 bp)
GAGCCGGAATGCAAGCCGTGCTACT
LOC_Os04g39380
OsAffx.14202.1.S1_at--756--5271Chr04:23216776..23216800 (25 bp)
GAATGCAAGCCGTGCTACTGGCCTC
LOC_Os04g39380
OsAffx.14202.1.S1_at--1102--7311Chr04:23216765..23216789 (25 bp)
GTGCTACTGGCCTCCCTACTGGTGC
LOC_Os04g39380
OsAffx.14202.1.S1_at--236--4531Chr04:23216738..23216762 (25 bp)
GCCGCCGGAGGATCCGACTTGCAAG
LOC_Os04g39380
OsAffx.14202.1.S1_at--846--8011Chr04:23216732..23216756 (25 bp)
GGAGGATCCGACTTGCAAGCCGTGC
LOC_Os04g39380
OsAffx.14202.1.S1_at--692--7971Chr04:23216729..23216753 (25 bp)
GGATCCGACTTGCAAGCCGTGCTAC
LOC_Os04g39380
OsAffx.14202.1.S1_at--1136--7311Chr04:23216711..23216735 (25 bp)
GTGCTACCCTCGCTACAGCTACGCG
LOC_Os04g39380
Target Sequence 
GGACAAGCTGGAGGTCGTCGGAGTCGGCGTCGACGTGACCCGCCTCGTCATCTGCCTGCGCAAGAAGGTGTGCTACGCCG
AGATCCTGCTGGTGGAGGAGGAGAAGGAGGAGGAGGAGAAGAAGGAGCCGGAATGCAAGCCGTGCTACTGGCCTCCCTAC
TGGTGCCCGCCGCCGGAGGATCCGACTTGCAAGCCGTGCTACCCTCGCTACAGCTACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis