Browse Element(s) Details


OsAffx.14273.1.S1_at

Description tigr:9632.m04339
TID=OsAffx.14273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Heavy-metal-associated domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4513011/11heavy-metal-associated domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14273.1.S1_at--834--2371Chr04:26466421..26466445 (25 bp)
AACACGAATTCAAACCTGCCCGAAG
LOC_Os04g45130
OsAffx.14273.1.S1_at--807--6611Chr04:26466380..26466404 (25 bp)
GTTGGTGACCGCCTACATATTTGTC
LOC_Os04g45130
OsAffx.14273.1.S1_at--145--9891Chr04:26466367..26466391 (25 bp)
TACATATTTGTCCTCATATCTCTCC
LOC_Os04g45130
OsAffx.14273.1.S1_at--1116--8291Chr04:26466337..26466361 (25 bp)
GGCTCATTCTACACGTACGCTGAAA
LOC_Os04g45130
OsAffx.14273.1.S1_at--223--8971Chr04:26466317..26466341 (25 bp)
TGAAATCCAAGCAGCCTTTCTCTCT
LOC_Os04g45130
OsAffx.14273.1.S1_at--958--9291Chr04:26466269..26466293 (25 bp)
TCCCCTTTCTTCTTCGAATTTCAGA
LOC_Os04g45130
OsAffx.14273.1.S1_at--18--831Chr04:26465834..26465856 (23 bp)
ATGGTATCGACTCCATAGCCGCCGA
LOC_Os04g45130
OsAffx.14273.1.S1_at--46--251Chr04:26465726..26465750 (25 bp)
ATATCATATCGGTTGGGCCCGCCAA
LOC_Os04g45130
OsAffx.14273.1.S1_at--572--5691Chr04:26465658..26465682 (25 bp)
GACTTCTTTAGTTTCAGGCCTTCAG
LOC_Os04g45130
OsAffx.14273.1.S1_at--111--1971Chr04:26465625..26465649 (25 bp)
ACTGTGTTCTTCTGATGGCGTGTAC
LOC_Os04g45130
OsAffx.14273.1.S1_at--1065--8451Chr04:26465610..26465634 (25 bp)
TGGCGTGTACACTTGGGCTATGTAT
LOC_Os04g45130
Target Sequence 
AACACGAATTCAAACCTGCCCGAAGAAAGAAGCCCGTACCGGTTGGTGACCGCCTACATATTTGTCCTCATATCTCTCCC
TTTTGGCTCATTCTACACGTACGCTGAAATCCAAGCAGCCTTTCTCTCTCTCGCGCGCGCGCGTTCTTCCTCTCCCCTTT
CTTCTTCGAATTTCAGAGCAGTTGGTGATGGCGCCGCAGAAGGTGATCTTGAAGGTTTCTTCTATGAGTGATACGAAAAT
GAAGCAGAAAGCAATGGAAACTGTTGCAGATATCTATGGTATCGACTCCATAGCCGCCGATCATAAAGATCAAAAGATGA
CTGTAATAGGTGAAGTTGACACCGTCGAGATCGCCAAGAAGTTGAAGAAATTCGGGAAGGTCGATATCATATCGGTTGGG
CCCGCCAAAGAAGAGAAGAAGGATGATAAGAAAGGGGACAAAAAGTGATCAGACTTCTTTAGTTTCAGGCCTTCAGATGA
ATATACTGTGTTCTTCTGATGGCGTGTACACTTGGGCTATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis