Browse Element(s) Details


OsAffx.14278.1.S1_at

Description tigr:9632.m04385
TID=OsAffx.14278.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glyoxalase family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4559011/11glyoxalase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45560NANA4+26734313..26734822hypothetical protein
LOC_Os04g45570Os.21851.1.S1_at11/114+26735390..26741178expressed protein
LOC_Os04g45580Os.54166.1.S1_at11/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45580Os.20403.2.S1_x_at1/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45590OsAffx.14278.1.S1_at11/114+26756515..26757416glyoxalase family protein, expressed
LOC_Os04g45600Os.47301.1.A1_at11/114+26758358..26759578expressed protein
LOC_Os04g45610Os.18729.1.S1_at11/114+26759553..26763085expressed protein
LOC_Os04g45610Os.18729.2.S1_at9/114+26759553..26763085expressed protein
LOC_Os04g45620OsAffx.4099.1.S1_at11/114+26764744..26765501hypothetical protein
LOC_Os04g45620OsAffx.4542.1.S1_at2/114+26764744..26765501hypothetical protein
LOC_Os04g45630OsAffx.14279.1.S1_at11/114+26769261..26770253hypothetical protein
LOC_Os04g45640OsAffx.14280.1.S1_at11/114+26776385..26777270hypothetical protein
LOC_Os04g45650Os.18449.1.S1_a_at11/114+26781712..26784533expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14278.1.S1_at--521--9251Chr04:26756615..26756639 (25 bp)
TCCTTTCAGTGCACGTCGGTGGAAA
LOC_Os04g45590
OsAffx.14278.1.S1_at--632--10631Chr04:26756672..26756696 (25 bp)
TTCGAGCTCATCAAGCGGCCGGAGT
LOC_Os04g45590
OsAffx.14278.1.S1_at--87--4491Chr04:26756689..26756713 (25 bp)
GCCGGAGTCCCTGAACTTCAATGGA
LOC_Os04g45590
OsAffx.14278.1.S1_at--653--5751Chr04:26756936..26756960 (25 bp)
GACGGTTGCAGCATCCCGACAAGAC
LOC_Os04g45590
OsAffx.14278.1.S1_at--224--6851Chr04:26756993..26757108 (25 bp)
GTTTCCTTCCAGTGCTCAGACATGG
LOC_Os04g45590
OsAffx.14278.1.S1_at--695--4851Chr04:26757125..26757149 (25 bp)
GCTACGAGCCATGGACCGGGAGTTC
LOC_Os04g45590
OsAffx.14278.1.S1_at--697--1391Chr04:26757175..26757199 (25 bp)
AGACGGTGGTGGACCAGCTCTTCTT
LOC_Os04g45590
OsAffx.14278.1.S1_at--868--7391Chr04:26757252..26757276 (25 bp)
GTGATACCCCTCATCGTTGCATCGA
LOC_Os04g45590
OsAffx.14278.1.S1_at--874--1371Chr04:26757313..26757337 (25 bp)
AGACCAATGTCCATGGCTAGCTCGA
LOC_Os04g45590
OsAffx.14278.1.S1_at--982--9991Chr04:26757330..26757354 (25 bp)
TAGCTCGAGCTACGTTCTTATGTCT
LOC_Os04g45590
OsAffx.14278.1.S1_at--306--6731Chr04:26757343..26757367 (25 bp)
GTTCTTATGTCTCTCCTTTGTACAT
LOC_Os04g45590
Target Sequence 
TCCTTTCAGTGCACGTCGGTGGAAAAGTCCGTCGACTTCTACCGCCGAGTGCTTGGCTTCGAGCTCATCAAGCGGCCGGA
GTCCCTGAACTTCAATGGAGCTTGGCTATACAAGTACGGGATGGGAATACATCTGCTGCAGCGGGGCGACGACGCCGACG
GTTGCAGCATCCCGACAAGACCGCTGCCGGCGATCAACCCGATGGGAAACCACGTTTCCTTCCAGTGCTCAGACATGGCG
GTCATGAAGGCGAGGCTACGAGCCATGGACCGGGAGTTCGTCGTGAGGAAAGTGTGGGACGGGGAGACGGTGGTGGACCA
GCTCTTCTTCCACGACCCCGACGGCAATATGATCGAGGTCTGCAACTGCGAGAACCTCCCCGTGATACCCCTCATCGTTG
CATCGACGCCCGGGCTTCCTGAGCTGCTGCCGCCGGCGATGCAGACCAATGTCCATGGCTAGCTCGAGCTACGTTCTTAT
GTCTCTCCTTTGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis