Browse Element(s) Details


OsAffx.14357.1.S1_at

Description tigr:9632.m04891
TID=OsAffx.14357.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5069010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50212OsAffx.19217.1.S1_x_at2/114+29754217..29754759hypothetical protein
LOC_Os04g50216Os.10083.1.S1_at11/114+29756150..29758746Gtk16 protein, putative, expressed
LOC_Os04g50660Os.27704.1.A1_at11/114+29762517..29769070U3 small nucleolar RNA-associated protein 13, putative, expressed
LOC_Os04g50670OsAffx.26553.2.S1_at11/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_x_at7/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_at6/114+29770077..29771979hypothetical protein
LOC_Os04g50680OsAffx.26554.1.S1_at11/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50680Os.57514.1.S1_x_at1/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50690OsAffx.14357.1.S1_at10/114+29778938..29779670hypothetical protein
LOC_Os04g50700NANA4+29782407..29783358Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g50710OsAffx.4138.1.S1_at11/114+29785219..29786034Pathogenesis-related protein Bet v I family protein
LOC_Os04g50720Os.50804.1.S1_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_s_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_at9/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50730Os.20398.1.S1_at11/114+29793068..29797326RWD domain containing protein, expressed
LOC_Os04g50740Os.54242.1.S1_at11/114+29797832..29801986Zinc finger found in FPG and IleRS family protein, expressed
LOC_Os04g50750OsAffx.4140.1.S1_at11/114+29802084..29802621hypothetical protein
LOC_Os04g50760Os.51663.1.S1_at10/114+29803678..29807080IBR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14357.1.S1_at--1156--8891Chr04:29779602..29779626 (25 bp)
TGAGATCGAGATCTGGCCCGTCTAT
LOC_Os04g50690
OsAffx.14357.1.S1_at--199--1291Chr04:29779594..29779618 (25 bp)
AGATCTGGCCCGTCTATCTACTGGG
LOC_Os04g50690
OsAffx.14357.1.S1_at--72--4031Chr04:29779584..29779608 (25 bp)
CGTCTATCTACTGGGCTCGCACGAG
LOC_Os04g50690
OsAffx.14357.1.S1_at--715--9351Chr04:29779538..29779562 (25 bp)
TCGCACGCGGACTGGGCTGAGAATT
LOC_Os04g50690
OsAffx.14357.1.S1_at--845--3851Chr04:29779071..29779546 (25 bp)
CTGAGAATTCATGGGCCGGGAGACC
LOC_Os04g50690
OsAffx.14357.1.S1_at--464--3971NONE
CGGGAGACCAAAACGTAGACGCAAT
NONE
OsAffx.14357.1.S1_at--652--10411Chr04:29779020..29779044 (25 bp)
TTATTGGCAGCCATGCAATGCATTA
LOC_Os04g50690
OsAffx.14357.1.S1_at--975--4931Chr04:29779001..29779025 (25 bp)
GCATTATACAAACGGTAGTCCTCGG
LOC_Os04g50690
OsAffx.14357.1.S1_at--1059--2571Chr04:29778991..29779015 (25 bp)
AACGGTAGTCCTCGGAGTGACGTCA
LOC_Os04g50690
OsAffx.14357.1.S1_at--200--7251Chr04:29778984..29779008 (25 bp)
GTCCTCGGAGTGACGTCACAGAATT
LOC_Os04g50690
OsAffx.14357.1.S1_at--1162--9691Chr04:29778969..29778993 (25 bp)
TCACAGAATTGACACTCGGAAGGTT
LOC_Os04g50690
Target Sequence 
TGAGATCGAGATCTGGCCCGTCTATCTACTGGGCTCGCACGAGCACGGCGCGGCACCACCCCAGTCGCACGCGGACTGGG
CTGAGAATTCATGGGCCGGGAGACCAAAACGTAGACGCAATTTGAATAAGATTATTGGCAGCCATGCAATGCATTATACA
AACGGTAGTCCTCGGAGTGACGTCACAGAATTGACACTCGGAAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis