Browse Element(s) Details


OsAffx.14387.3.S1_at

Description tigr:9632.m05139
TID=OsAffx.14387.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5300011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52950Os.50496.1.S1_at11/114+31322937..31323695Nitrate-induced NOI protein, expressed
LOC_Os04g52960Os.23208.1.S1_at11/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52960Os.27035.2.S1_s_at1/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52970Os.22807.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970Os.18578.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970OsAffx.14387.1.S1_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52980OsAffx.26583.1.S1_at11/114+31340744..31341013expressed protein
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed
LOC_Os04g53040Os.51599.2.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.1.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.2.A1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040OsAffx.18229.1.S1_x_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.53813.1.S1_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14387.3.S1_at--869--5651Chr04:31346716..31346740 (25 bp)
GACAGTATATGAATCGCCCAGCATG
LOC_Os04g53000
OsAffx.14387.3.S1_at--396--4551Chr04:31346731..31346755 (25 bp)
GCCCAGCATGCCTCAATGTTTTGAG
LOC_Os04g53000
OsAffx.14387.3.S1_at--152--7391Chr04:31346817..31346841 (25 bp)
GTGATGGCTTTATCCTTACTGTTTC
LOC_Os04g53000
OsAffx.14387.3.S1_at--511--2391Chr04:31346849..31346873 (25 bp)
AAACAGCTCACGTCTCTGAGAGATC
LOC_Os04g53000
OsAffx.14387.3.S1_at--1106--1331Chr04:31346867..31346891 (25 bp)
AGAGATCTATTCTTCTGGCCTGAAC
LOC_Os04g53000
OsAffx.14387.3.S1_at--499--2591Chr04:31346889..31346913 (25 bp)
AACGAAGCAAGCCTGATGCGACGAT
LOC_Os04g53000
OsAffx.14387.3.S1_at--309--551Chr04:31346959..31346983 (25 bp)
ATCCCTCGAACGTCTCAACTTTTGG
LOC_Os04g53000
OsAffx.14387.3.S1_at--323--7511Chr04:31347040..31347064 (25 bp)
GTGGTTAGATATCTCAGACTGCCCC
LOC_Os04g53000
OsAffx.14387.3.S1_at--774--8431Chr04:31347089..31347113 (25 bp)
GGCCTTCCACCATCGTTGAGGAGAT
LOC_Os04g53000
OsAffx.14387.3.S1_at--624--10151Chr04:31347114..31347138 (25 bp)
TATCTTTATGCCGTTGCAGCGACGA
LOC_Os04g53000
OsAffx.14387.3.S1_at--293--1651Chr04:31347131..31347155 (25 bp)
AGCGACGACCTAAGTATGCAGTGCA
LOC_Os04g53000
Target Sequence
GACAGTATATGAATCGCCCAGCATGCCTCAATGTTTTGAGATTCTATCACAACAACATGGGGCCTCTGAGATCTTGTCCC
GACTGGAAAATCTTCAGATCAGTGATGGCTTTATCCTTACTGTTTCCCTCTGCAAACAGCTCACGTCTCTGAGAGATCTA
TTCTTCTGGCCTGAACGAAGCAAGCCTGATGCGACGATGATGGGTCTGACAGAGGAACAAGAGAGAGCACTCCAGCTTCT
GACATCCCTCGAACGTCTCAACTTTTGGGGGTTGCCGAATCTCTTGTCCCTTCCTGCAAATCTAGCAAGCCTGACCTCCC
TCGAGTGGTTAGATATCTCAGACTGCCCCCGCATGGCAAGGCTGCCAGAGATGGGCCTTCCACCATCGTTGAGGAGATTA
TCTTTATGCCGTTGCAGCGACGACCTAAGTATGCAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14387.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis