Browse Element(s) Details


OsAffx.14389.1.S1_at

Description tigr:9632.m05142
TID=OsAffx.14389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5303011/11NB-ARC domain containing protein, expressed
LOC_Os01g735002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52970Os.22807.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970Os.18578.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970OsAffx.14387.1.S1_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52980OsAffx.26583.1.S1_at11/114+31340744..31341013expressed protein
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed
LOC_Os04g53040Os.51599.2.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.1.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.2.A1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040OsAffx.18229.1.S1_x_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.53813.1.S1_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53050OsAffx.30177.1.S1_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050OsAffx.30177.1.S1_x_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050Os.37971.1.A1_at1/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53060OsAffx.14390.1.S1_at11/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53060OsAffx.26587.1.S1_x_at2/114+31386340..31388283Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14389.1.S1_at--923--5711Chr04:31363740..31363764 (25 bp)
GACTCCCTCTTTTATCACTTGAAGA
LOC_Os04g53030
OsAffx.14389.1.S1_at--121--2371Chr04:31363770..31363794 (25 bp)
AAACCAGAGGCTGCACTGAGGAACT
LOC_Os04g53030
OsAffx.14389.1.S1_at--654--10091Chr04:31363798..31363822 (25 bp)
TAGGCAGTGCAGACTAGCAGCGACA
LOC_Os04g53030
OsAffx.14389.1.S1_at--424--3171Chr04:31363840..31364164 (25 bp)
AATTGATGGGAAACCGCGGCTGTCT
LOC_Os04g53030
OsAffx.14389.1.S1_at--1078--3931Chr04:31364156..31364180 (25 bp)
CGGCTGTCTGTCATTGCTTGTGCAA
LOC_Os04g53030
OsAffx.14389.1.S1_at--125--8534Chr09:19618390..19618414 (25 bp)
TGGACGGCGGACAGGTTAAGCATCA
NONE
OsAffx.14389.1.S1_at--91--4911Chr04:31364409..31364433 (25 bp)
GCTTCACCCCAGCATGTGTGTCTTA
LOC_Os04g53030
OsAffx.14389.1.S1_at--750--7451Chr04:31364426..31364450 (25 bp)
GTGTCTTATGCGATCAGCACGAAGA
LOC_Os04g53030
OsAffx.14389.1.S1_at--649--9694Chr09:19618474..19618497 (24 bp)
TCACATTTTGGTCGCATGCCCAGAA
NONE
OsAffx.14389.1.S1_at--256--5592Chr04:31364548..31364572 (25 bp)
GAAATCTCATTCCATTCCTGGTTGT
LOC_Os04g53030
OsAffx.14389.1.S1_at--643--10631Chr04:31364614..31364638 (25 bp)
TTCGATACCATTGCTACACTCGCAG
LOC_Os04g53030
Target Sequence 
GACTCCCTCTTTTATCACTTGAAGAATTGGAAACCAGAGGCTGCACTGAGGAACTAAATAGGCAGTGCAGACTAGCAGCG
ACAGAAAAGCTAAAGGTCCTAATTGATGGGAAACCGCGGCTGTCTGTCATTGCTTGTGCAATCGCACTCAACCGCTGCTG
GACGGCGGACAGGTTAAGCATCAGGGGCTTGCTTCACCCCAGCATGTGTGTCTTATGCGATCAGCACGAAGAAAGCATCG
ATCACATTTTGGTCGCATGCCCAGAATCAAGGCAGCTCTGGTGGCTACTGCTCTCGGCCATCAGTCGCCCGGAATGCTTG
CCCGTCAATGAAATCTCATTCCATTCCTGGTTGTGTGACAAGAGGGAAACCTTCCCAAGCTCTCAACGGCGAGGTTTCGA
TACCATTGCTACACTCGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis