Browse Element(s) Details


OsAffx.14461.1.S1_at

Description tigr:9632.m05663
TID=OsAffx.14461.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5798011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57920OsAffx.14483.1.S1_at11/114+34286654..34294205F-box domain containing protein, expressed
LOC_Os04g57930OsAffx.14459.1.S1_at10/114+34294528..34296238Thioredoxin X, chloroplast precursor, putative, expressed
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed
LOC_Os04g57950OsAffx.14460.1.S1_at11/114+34300621..34304516Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os04g57970Os.5913.1.S1_at11/114+34314834..34317184expressed protein
LOC_Os04g57970OsAffx.29486.1.S1_x_at1/114+34314834..34317184expressed protein
LOC_Os04g57980OsAffx.14461.1.S1_at11/114+34317934..34319194hypothetical protein
LOC_Os04g58000Os.53477.1.S1_at2/114+34322396..34326468B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.4204.1.A1_at11/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.14462.1.S1_at10/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58020Os.15556.1.S1_at11/114+34336077..34340491myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14461.1.S1_at--165--8971Chr04:34317972..34317996 (25 bp)
TGAAACTGAACCATCCTTGCTACAA
LOC_Os04g57980
OsAffx.14461.1.S1_at--901--7391Chr04:34318013..34318274 (25 bp)
GTGATTTGGCTACTACTAATCCTAC
LOC_Os04g57980
OsAffx.14461.1.S1_at--160--3691Chr04:34318280..34318304 (25 bp)
CTATACCACAAGATGCCACACAAAT
LOC_Os04g57980
OsAffx.14461.1.S1_at--730--6351Chr04:34318291..34318315 (25 bp)
GATGCCACACAAATCCTAATTGTTA
LOC_Os04g57980
OsAffx.14461.1.S1_at--694--6791Chr04:34318312..34318336 (25 bp)
GTTATTGCAACTTCAGACACCCTGA
LOC_Os04g57980
OsAffx.14461.1.S1_at--789--2151Chr04:34318328..34318352 (25 bp)
ACACCCTGATCATCCCTGGTAGTAA
LOC_Os04g57980
OsAffx.14461.1.S1_at--761--7851Chr04:34318345..34318369 (25 bp)
GGTAGTAACACCTGTGCCATGGACA
LOC_Os04g57980
OsAffx.14461.1.S1_at--110--4431Chr04:34318360..34318383 (24 bp)
GCCATGGACAAGTCTTTGCTTAAGA
LOC_Os04g57980
OsAffx.14461.1.S1_at--289--5771Chr04:34319078..34319102 (25 bp)
GACGTTACACTGGACGGTACCACAA
LOC_Os04g57980
OsAffx.14461.1.S1_at--407--7851Chr04:34319093..34319117 (25 bp)
GGTACCACAAATGGCACCCTGTTTA
LOC_Os04g57980
OsAffx.14461.1.S1_at--97--2291Chr04:34319101..34319125 (25 bp)
AAATGGCACCCTGTTTATCGAAACT
LOC_Os04g57980
Target Sequence 
TGAAACTGAACCATCCTTGCTACAAGAACAACTGAATGATTGTGATTTGGCTACTACTAATCCTACTACCCCTATACCAC
AAGATGCCACACAAATCCTAATTGTTATTGCAACTTCAGACACCCTGATCATCCCTGGTAGTAACACCTGTGCCATGGAC
AAGTCTTTGCTTAAGACTAAAGTGGACGTTACACTGGACGGTACCACAAATGGCACCCTGTTTATCGAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis