Browse Element(s) Details


OsAffx.14556.1.S1_at

Description tigr:9633.m00473
TID=OsAffx.14556.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0539011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05354OsAffx.14555.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354Os.10892.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_at3/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_x_at3/115+2616872..2627073expressed protein
LOC_Os05g05354Os.16798.1.S1_at2/115+2616872..2627073expressed protein
LOC_Os05g05370OsAffx.26741.1.S1_at11/115+2630067..2634575hypothetical protein
LOC_Os05g05380OsAffx.4256.1.S1_at9/115+2643059..2644165hypothetical protein
LOC_Os05g05390OsAffx.14556.1.S1_at11/115+2650647..2657552expressed protein
LOC_Os05g05390OsAffx.26617.5.S1_x_at2/115+2650647..2657552expressed protein
LOC_Os05g05400NANA5+2661786..2662555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g05410NANA5+2663080..2665837retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.1.S1_x_at6/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.5.S1_x_at3/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.3.S1_x_at2/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05430OsAffx.14557.1.S1_at10/115+2677359..2677797hypothetical protein
LOC_Os05g05440Os.19380.1.S1_at11/115+2681413..2689941expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14556.1.S1_at--377--5331Chr05:2653281..2653302 (22 bp)
GAAGTGTCATCAGGGTCTACTATTG
LOC_Os05g05390
OsAffx.14556.1.S1_at--467--7191Chr05:2653239..2653263 (25 bp)
GTCGGCGATATCATTCAGCATTTAA
LOC_Os05g05390
OsAffx.14556.1.S1_at--54--6691Chr05:2653101..2653125 (25 bp)
GTTGCTGAGACTTTCTGAGGATCAT
LOC_Os05g05390
OsAffx.14556.1.S1_at--88--5591Chr05:2653066..2653090 (25 bp)
GAAATGGTCTCAATTCCACATTGGA
LOC_Os05g05390
OsAffx.14556.1.S1_at--350--10551Chr05:2652580..2652604 (25 bp)
TTCTGTCCCTACTCGGGAGGAGATT
LOC_Os05g05390
OsAffx.14556.1.S1_at--609--6531Chr05:2652559..2652583 (25 bp)
GATTTCTGCTATGTACGCACTTCAG
LOC_Os05g05390
OsAffx.14556.1.S1_at--54--471Chr05:2650822..2650846 (25 bp)
ATCTCCCATGCTCACTACTGAAGAG
LOC_Os05g05390
OsAffx.14556.1.S1_at--263--2051Chr05:2650784..2650808 (25 bp)
AATCCATAACTAGACCGGGCTTCGT
LOC_Os05g05390
OsAffx.14556.1.S1_at--636--4251Chr05:2650770..2650794 (25 bp)
CCGGGCTTCGTTTTAATCTGATTCA
LOC_Os05g05390
OsAffx.14556.1.S1_at--438--291Chr05:2650722..2650746 (25 bp)
ATAGTCTCATCATACGCCTGTTACC
LOC_Os05g05390
OsAffx.14556.1.S1_at--1122--3751Chr05:2650698..2650722 (25 bp)
CTCTTCTACCTCTGCTATTAATATC
LOC_Os05g05390
Target Sequence 
GAAGTGTCATCAGGGTCTACTATTGAGAAACTGGGAGTCAGAGTCGGCGATATCATTCAGCATTTAAATGGAGAATGGGT
TTCTGATACAATTCAGTTAGAAGAAATGTTGCTGAGACTTTCTGAGGATCATTTTGACAAAGGAAATGGTCTCAATTCCA
CATTGGACATTAAAGTTGGTTTGTTTCACATACGCAATGGAGCTCGAAACACCATAAATTTGACGACAGTTGTCTCAGAA
AATGGAGAAGTTGTTAAGAGGGGTTCATTCGCTGTTTCTGTCCCTACTCGGGAGGAGATTTCTGCTATGTACGCACTTCA
GGAAGCAACTACAGGATCTCCCATGCTCACTACTGAAGAGAGGAAACCCACCTAATCCATAACTAGACCGGGCTTCGTTT
TAATCTGATTCATGCTATTATCAACTTGTACATTGATAGTCTCATCATACGCCTGTTACCTCTTCTACCTCTGCTATTAA
TATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis