Browse Element(s) Details


OsAffx.14586.1.S1_s_at

Description tigr:9633.m00701
TID=OsAffx.14586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0784010/11hypothetical protein
LOC_Os07g408301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07799NANA5+4180901..4181962NA
LOC_Os05g07810Os.51752.2.S1_x_at9/115+4183629..4185712universal stress protein family protein, expressed
LOC_Os05g07820OsAffx.14585.1.S1_s_at11/115+4189805..4194694Leucine Rich Repeat family protein, expressed
LOC_Os05g07830OsAffx.26776.1.S1_at11/115+4200575..4202939hypothetical protein
LOC_Os05g07830Os.54301.1.S1_at5/115+4200575..4202939hypothetical protein
LOC_Os05g07840OsAffx.14586.1.S1_s_at10/115+4203967..4204586hypothetical protein
LOC_Os05g07850OsAffx.26777.1.S1_at10/115+4208166..4217999Protein kinase domain containing protein
LOC_Os05g07860Os.16765.1.S1_at11/115+4221569..4224764UvrB/uvrC motif family protein, expressed
LOC_Os05g07870Os.27613.1.A1_at11/115+4228015..4233055Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14586.1.S1_s_at--368--8091Chr05:4204523..4204547 (25 bp)
GGAGCCTCGCTTCTCGGCAATGCCG
LOC_Os05g07840
OsAffx.14586.1.S1_s_at--181--7212Chr07:24465534..24465596 (25 bp)
GTCGTCGTCGGCTCATGGGCAGCAC
LOC_Os07g40830
OsAffx.14586.1.S1_s_at--378--9411Chr05:4204397..4204421 (25 bp)
TCGTCGGCTCATGGGCAGCACTGGA
LOC_Os05g07840
OsAffx.14586.1.S1_s_at--848--3751Chr05:4204390..4204414 (25 bp)
CTCATGGGCAGCACTGGAAGGATCA
LOC_Os05g07840
OsAffx.14586.1.S1_s_at--14--1511Chr05:4204381..4204405 (25 bp)
AGCACTGGAAGGATCAGAGCCGCCA
LOC_Os05g07840
OsAffx.14586.1.S1_s_at--819--8511Chr05:4204376..4204400 (25 bp)
TGGAAGGATCAGAGCCGCCACGCCG
LOC_Os05g07840
OsAffx.14586.1.S1_s_at--870--10511Chr05:4204295..4204319 (25 bp)
TTCAGCGACGACAAGAGGTTCTCGC
LOC_Os05g07840
OsAffx.14586.1.S1_s_at--513--5611Chr05:4204286..4204310 (25 bp)
GACAAGAGGTTCTCGCCGACTGGAT
LOC_Os05g07840
OsAffx.14586.1.S1_s_at--439--1011Chr05:4204280..4204304 (25 bp)
AGGTTCTCGCCGACTGGATCAAATC
LOC_Os05g07840
OsAffx.14586.1.S1_s_at--806--5731Chr05:4204269..4204293 (25 bp)
GACTGGATCAAATCCGCTGCACAAC
LOC_Os05g07840
OsAffx.14586.1.S1_s_at--580--6451NONE
GATCAAATCCGCTGCACAACTTGAG
NONE
Target Sequence 
GGAGCCTCGCTTCTCGGCAATGCCGTCGCCGCCGCCGTCGTCCCGTCGTCGTCGCCGGAGCAGCAGCAGCAGCAGCAGCG
GCGGCCGCGGCCGCCTCCCGGTTCCAAGAACGGCGCCTCGCCGTCGTCGTCGGCTCATGGGCAGCACTGGAAGGATCAGA
GCCGCCACGCCGCCTTCACCCGACGGCGGTTCGGCACCGGCACCGGCGGCGGCGGCGACGATGGCTTCTTCAGCGACGAC
AAGAGGTTCTCGCCGACTGGATCAAATCCGCTGCACAACTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14586.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis