Browse Element(s) Details


OsAffx.14636.1.S1_at

Description tigr:9633.m00999
TID=OsAffx.14636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1136011/11rhamnose biosynthetic enzyme 1, putative
LOC_Os11g176001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11320OsAffx.9949.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.2256.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.7992.3.S1_x_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11330Os.55257.1.S1_at11/115+6385067..6385803Rapid ALkalinization Factor family protein, expressed
LOC_Os05g11340OsAffx.26831.1.S1_at11/115+6388276..6389171hypothetical protein
LOC_Os05g11350OsAffx.26832.1.S1_at10/115+6394057..6395676expressed protein
LOC_Os05g11360OsAffx.14636.1.S1_at11/115+6395840..6396442rhamnose biosynthetic enzyme 1, putative
LOC_Os05g11370Os.52040.1.S1_at11/115+6398776..6402275expressed protein
LOC_Os05g11380OsAffx.4301.2.S1_at11/115+6413046..6413875SRF-type transcription factor family protein
LOC_Os05g11390NANA5+6417218..6417933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11400OsAffx.11264.1.S1_s_at3/115+6420038..6424007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11400OsAffx.20408.1.S1_at1/115+6420038..6424007retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009225biological_processnucleotide-sugar metabolism
GO:0010192biological_processmucilage biosynthesis
GO:0010214biological_processseed coat development
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14636.1.S1_at--876--7011Chr05:6396362..6396386 (25 bp)
GTACACGACGCCGAGGAACATCCTG
LOC_Os05g11360
OsAffx.14636.1.S1_at--1156--2091Chr05:6396345..6396369 (25 bp)
ACATCCTGATCACTGGCGCGGCGGG
LOC_Os05g11360
OsAffx.14636.1.S1_at--689--9351Chr05:6396310..6396334 (25 bp)
TCGCACGTGGCGAACCGGCTGTTGC
LOC_Os05g11360
OsAffx.14636.1.S1_at--81--8451Chr05:6396303..6396327 (25 bp)
TGGCGAACCGGCTGTTGCGCGACCA
LOC_Os05g11360
OsAffx.14636.1.S1_at--1008--4071Chr05:6396131..6396155 (25 bp)
CGAGCGGATCAACACTGTCATGCAC
LOC_Os05g11360
OsAffx.14636.1.S1_at--185--2751Chr05:6396061..6396085 (25 bp)
AAGAACAACGTGCTCGGCACCCACG
LOC_Os05g11360
OsAffx.14636.1.S1_at--814--10611Chr05:6395987..6396011 (25 bp)
TTCGTCCACGTCAGCACCGACGAGG
LOC_Os05g11360
OsAffx.14636.1.S1_at--471--1031Chr05:6395965..6395989 (25 bp)
AGGTCTACGGCGACGCTGCCACGGC
LOC_Os05g11360
OsAffx.14636.1.S1_at--267--3251Chr05:6395901..6395925 (25 bp)
CAACCAATCTTTTAAAGAGCGGGCA
LOC_Os05g11360
OsAffx.14636.1.S1_at--553--1331Chr05:6395886..6395910 (25 bp)
AGAGCGGGCAAAGGCATTTAGCAGT
LOC_Os05g11360
OsAffx.14636.1.S1_at--337--8295Chr11:9777889..9777908 (20 bp)
GGCATTTAGCAGTTAGCTTCTCAAT
LOC_Os11g17600
Target Sequence 
GTACACGACGCCGAGGAACATCCTGATCACTGGCGCGGCGGGGTTCATCGCGTCGCACGTGGCGAACCGGCTGTTGCGCG
ACCACCCGTCGTACCGGGTGGTGGCGCTCGACAAGCTCGACGACTACTGCGCCACCCTCAACAACCTGGCTCCGGCGATG
GCGTCGCCCAACTTCGCCTTCGTCCGCGGCGACGTCGCCTCCGCCGACCTCGTCCTCCACCTCCTCCTCGCCGAGCGGAT
CAACACTGTCATGCACTTCGCCGCCCACACCCACGTCGACGACAACTCCTTCGAGTTCACCAAGAACAACGTGCTCGGCA
CCCACGTCCTCCTCGAGCCATGCCGCCGGAAGGCGCCGCCGGCGCCATCCGCCGCTTCGTCCACGTCAGCACCGACGAGG
TCTACGGCGACGCTGCCACGGCGGGCAACCACGAGGCGTCGCGGGCGCGGCTGCTCCCCACCAACCAATCTTTTAAAGAG
CGGGCAAAGGCATTTAGCAGTTAGCTTCTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis