Browse Element(s) Details


OsAffx.14764.1.S1_at

Description tigr:9633.m01808
TID=OsAffx.14764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1992011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19900Os.10731.1.A1_a_at11/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.38764.1.S1_x_at8/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.46610.1.S1_x_at4/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45173.1.S1_x_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45173.3.S1_x_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900OsAffx.8473.1.S1_x_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45173.3.S1_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.48015.1.A1_x_at2/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.10263.1.S1_at2/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900OsAffx.20733.1.A1_x_at2/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.51841.1.S1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.47999.3.A1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.47999.2.A1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45902.1.A1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19910Os.48074.1.A1_at11/115+11588767..11594325Transferase family protein, expressed
LOC_Os05g19920OsAffx.14764.1.S1_at11/115+11599910..11600128hypothetical protein
LOC_Os05g19930Os.51348.1.S1_x_at3/115+11611273..11615092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19940NANA5+11616289..11617095hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14764.1.S1_at--72--7571Chr05:11599945..11599969 (25 bp)
GGGCGGATCAGCCTCCAACACTGGA
LOC_Os05g19920
OsAffx.14764.1.S1_at--1019--7951Chr05:11599949..11599973 (25 bp)
GGATCAGCCTCCAACACTGGAGGGA
LOC_Os05g19920
OsAffx.14764.1.S1_at--747--3791Chr05:11599957..11599981 (25 bp)
CTCCAACACTGGAGGGAGCAGCGGC
LOC_Os05g19920
OsAffx.14764.1.S1_at--981--7591Chr05:11600005..11600029 (25 bp)
GGGCAGATCCACTGATGAGAACCTC
LOC_Os05g19920
OsAffx.14764.1.S1_at--1148--5031Chr05:11600007..11600031 (25 bp)
GCAGATCCACTGATGAGAACCTCGA
LOC_Os05g19920
OsAffx.14764.1.S1_at--364--6311Chr05:11600018..11600042 (25 bp)
GATGAGAACCTCGACAACAGCGGAT
LOC_Os05g19920
OsAffx.14764.1.S1_at--351--5971Chr05:11600021..11600045 (25 bp)
GAGAACCTCGACAACAGCGGATCAG
LOC_Os05g19920
OsAffx.14764.1.S1_at--731--1751Chr05:11600025..11600049 (25 bp)
ACCTCGACAACAGCGGATCAGGTGG
LOC_Os05g19920
OsAffx.14764.1.S1_at--986--7631Chr05:11600052..11600076 (25 bp)
GGGACCTCCGCAATAGTGGATCCAG
LOC_Os05g19920
OsAffx.14764.1.S1_at--1115--1751Chr05:11600055..11600079 (25 bp)
ACCTCCGCAATAGTGGATCCAGCAT
LOC_Os05g19920
OsAffx.14764.1.S1_at--234--291Chr05:11600064..11600088 (25 bp)
ATAGTGGATCCAGCATGAGGGAGAA
LOC_Os05g19920
Target Sequence 
GGGCGGATCAGCCTCCAACACTGGAGGGAGCAGCGGCGATGATGGCGTCGGCCTCGGGAGGGGCAGATCCACTGATGAGA
ACCTCGACAACAGCGGATCAGGTGGCGGGGACCTCCGCAATAGTGGATCCAGCATGAGGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis