Browse Element(s) Details


OsAffx.14776.1.S1_at

Description tigr:9633.m01895
TID=OsAffx.14776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g207709/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g151901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g20740NANA5+12151225..12151899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g20750OsAffx.4434.1.S1_at1/115+12156645..12161669transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g20760Os.40855.2.S1_x_at10/115+12164622..12167812hypothetical protein
LOC_Os05g20760Os.40855.4.S1_x_at4/115+12164622..12167812hypothetical protein
LOC_Os05g20760Os.40360.1.S1_x_at3/115+12164622..12167812hypothetical protein
LOC_Os05g20760Os.40855.5.S1_x_at3/115+12164622..12167812hypothetical protein
LOC_Os05g20760Os.40855.4.S1_at1/115+12164622..12167812hypothetical protein
LOC_Os05g20770OsAffx.14776.1.S1_x_at9/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20770OsAffx.14776.1.S1_at9/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20770OsAffx.20927.1.S1_at2/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20770OsAffx.17778.2.S1_at2/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20770OsAffx.6537.1.S1_at1/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20770OsAffx.20927.1.S1_x_at1/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20780NANA5+12180548..12182155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20790NANA5+12182595..12182822retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.1.S1_x_at10/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.3.S1_x_at9/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.3.S1_s_at4/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.53142.1.S1_at3/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.4.S1_x_at1/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.23706.1.A1_x_at1/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20810NANA5+12191521..12192583retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20820OsAffx.20590.1.S1_at1/115+12197940..12200429retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14776.1.S1_at--189--3511Chr05:12174972..12175092 (25 bp)
CATGTAAAACATGGTCATCTAGGCA
LOC_Os05g20770
OsAffx.14776.1.S1_at--292--7051Chr05:12174975..12175095 (25 bp)
GTAAAACATGGTCATCTAGGCAAGT
LOC_Os05g20770
OsAffx.14776.1.S1_at--295--2391Chr05:12174978..12175098 (25 bp)
AAACATGGTCATCTAGGCAAGTTAC
LOC_Os05g20770
OsAffx.14776.1.S1_at--949--2111Chr05:12174980..12175100 (25 bp)
ACATGGTCATCTAGGCAAGTTACGG
LOC_Os05g20770
OsAffx.14776.1.S1_at--445--7813Chr08:14367215..14367526 (25 bp)
GGTCATCTAGGCAAGTTACGGGTCA
NONE
OsAffx.14776.1.S1_at--367--9591NONE
TCATCTAGGCAAGTTACGGGTCATC
NONE
OsAffx.14776.1.S1_at--405--431NONE
ATCTAGGCAAGTTACGGGTCATCGA
NONE
OsAffx.14776.1.S1_at--351--8193Chr08:14367511..14367535 (25 bp)
GGCAAGTTACGGGTCATCGAGCCTT
NONE
OsAffx.14776.1.S1_at--904--5173Chr08:14367512..14367536 (25 bp)
GCAAGTTACGGGTCATCGAGCCTTC
NONE
OsAffx.14776.1.S1_at--742--2811Chr05:12175092..12175116 (25 bp)
AAGTTACGGGTCATCGAGCCTTCTC
LOC_Os05g20770
OsAffx.14776.1.S1_at--1052--6771Chr05:12175094..12175118 (25 bp)
GTTACGGGTCATCGAGCCTTCTCCT
LOC_Os05g20770
Target Sequence 
CATGTAAAACATGGTCATCTAGGCAAGTTACGGGTCATCGAGCCTTCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis