Browse Element(s) Details


OsAffx.4434.1.S1_at

Description tigr:9633.m02349
TID=OsAffx.4434.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g207501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g20720NANA5+12135405..12139111transposon protein, putative, unclassified
LOC_Os05g20730NANA5+12141536..12143717Zinc knuckle family protein
LOC_Os05g20740NANA5+12151225..12151899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g20750OsAffx.4434.1.S1_at1/115+12156645..12161669transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g20760Os.40855.2.S1_x_at10/115+12164622..12167812hypothetical protein
LOC_Os05g20760Os.40855.4.S1_x_at4/115+12164622..12167812hypothetical protein
LOC_Os05g20760Os.40360.1.S1_x_at3/115+12164622..12167812hypothetical protein
LOC_Os05g20760Os.40855.5.S1_x_at3/115+12164622..12167812hypothetical protein
LOC_Os05g20760Os.40855.4.S1_at1/115+12164622..12167812hypothetical protein
LOC_Os05g20770OsAffx.14776.1.S1_x_at9/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20770OsAffx.14776.1.S1_at9/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20770OsAffx.20927.1.S1_at2/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20770OsAffx.17778.2.S1_at2/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20770OsAffx.6537.1.S1_at1/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20770OsAffx.20927.1.S1_x_at1/115+12172833..12178861retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20780NANA5+12180548..12182155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20790NANA5+12182595..12182822retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.1.S1_x_at10/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.3.S1_x_at9/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.3.S1_s_at4/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.53142.1.S1_at3/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.4.S1_x_at1/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.23706.1.A1_x_at1/115+12186306..12189104retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4434.1.S1_at--508--10771Chr05:15075032..15075056 (25 bp)
TTGAGTCTAGCGAGCTACACCCCGA
NONE
OsAffx.4434.1.S1_at--554--2393Chr05:15075065..15075089 (25 bp)
AAAAAGGAGAGTATGTTTGAATGCC
NONE
OsAffx.4434.1.S1_at--548--5091Chr05:15075586..15075610 (25 bp)
GCACCGACGTTGTCATCGAGCTAGG
NONE
OsAffx.4434.1.S1_at--311--4231Chr05:15075589..15075613 (25 bp)
CCGACGTTGTCATCGAGCTAGGCAA
NONE
OsAffx.4434.1.S1_at--769--1551Chr05:15075604..15075628 (25 bp)
AGCTAGGCAACGACGGTGAGACGAC
NONE
OsAffx.4434.1.S1_at--1063--7371Chr05:15075619..15075643 (25 bp)
GTGAGACGACAGAAGGACAGCCTAA
NONE
OsAffx.4434.1.S1_at--376--1471Chr05:15075629..15075653 (25 bp)
AGAAGGACAGCCTAACGGGCGACGA
NONE
OsAffx.4434.1.S1_at--967--6111Chr05:15075680..15075704 (25 bp)
GAGTGGTGCGCGACGGACGATAGGA
NONE
OsAffx.4434.1.S1_at--265--6391Chr05:15075764..15076163 (25 bp)
GATCGAGAAGTTGGAGGACGTTCAA
NONE
OsAffx.4434.1.S1_at--233--991Chr05:15076183..15076207 (25 bp)
AGGATGTGAATGAAACTCGACTTAT
NONE
OsAffx.4434.1.S1_at--624--2531Chr05:15076196..15076220 (25 bp)
AACTCGACTTATAGTGGAGGGACGT
NONE
Target Sequence 
TTGAGTCTAGCGAGCTACACCCCGAGCAAGGAAAAAAAGGAGAGTATGTTTGAATGCCTGGAGAGCATCAAGGAAGGCAC
CGACGTTGTCATCGAGCTAGGCAACGACGGTGAGACGACAGAAGGACAGCCTAACGGGCGACGAGGAGAAGGGCGGTGGC
CAGTGGGAAGGAGTGGTGCGCGACGGACGATAGGAGAAGAGTTGGCAGATGGCATAGATGGAGGTGACGGCAAGGGTGGA
ATGCGGGATGGAGCGATCGAGAAGTTGGAGGACGTTCAATACCCGGTTTTGCAGCTGAAGGATGTGAATGAAACTCGACT
TATAGTGGAGGGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis