Browse Element(s) Details


OsAffx.14790.1.S1_at

Description tigr:9633.m02094
TID=OsAffx.14790.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2359011/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23550OsAffx.4404.1.S1_at10/115+13417374..13422690hypothetical protein
LOC_Os05g23550OsAffx.707.1.S1_at2/115+13417374..13422690hypothetical protein
LOC_Os05g23560OsAffx.14789.1.S1_at10/115+13433843..13434206hypothetical protein
LOC_Os05g23570OsAffx.12420.1.S1_at1/115+13439065..13439730hypothetical protein
LOC_Os05g23580OsAffx.26984.1.S1_at11/115+13441429..13443084hypothetical protein
LOC_Os05g23590OsAffx.14790.1.S1_at11/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23590OsAffx.25367.1.S1_at1/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23600Os.11245.1.S2_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23600Os.11245.1.S1_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23610Os.17851.1.S1_at11/115+13458257..13462992Protein phosphatase inhibitor 2 containing protein, expressed
LOC_Os05g23620OsAffx.26985.1.S1_x_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23620Os.10952.1.S1_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14790.1.S1_at--309--4211Chr05:13450222..13450246 (25 bp)
CCGCGCAGATGGTCACGTTGTCCAA
LOC_Os05g23590
OsAffx.14790.1.S1_at--538--1311Chr05:13450216..13450240 (25 bp)
AGATGGTCACGTTGTCCAACCTCTG
LOC_Os05g23590
OsAffx.14790.1.S1_at--1116--8691Chr05:13450204..13450228 (25 bp)
TGTCCAACCTCTGCGATGAGGACGA
LOC_Os05g23590
OsAffx.14790.1.S1_at--73--7511Chr05:13450162..13450186 (25 bp)
GTGGTCGCCGCAAGCTGGCTCCTAC
LOC_Os05g23590
OsAffx.14790.1.S1_at--14--2691Chr05:13450151..13450175 (25 bp)
AAGCTGGCTCCTACCGCGGTGGTGT
LOC_Os05g23590
OsAffx.14790.1.S1_at--328--9651Chr05:13450114..13450138 (25 bp)
TCACGCTACTGGACGTCATCCGGCG
LOC_Os05g23590
OsAffx.14790.1.S1_at--989--1931Chr05:13450107..13450131 (25 bp)
ACTGGACGTCATCCGGCGTCGACTA
LOC_Os05g23590
OsAffx.14790.1.S1_at--1097--4251Chr05:13450095..13450119 (25 bp)
CCGGCGTCGACTAGCCTCCGTGGAG
LOC_Os05g23590
OsAffx.14790.1.S1_at--101--6151Chr05:13450073..13450097 (25 bp)
GAGGTCGAGGACAAAGATACAGAGC
LOC_Os05g23590
OsAffx.14790.1.S1_at--295--9871Chr05:13450056..13450080 (25 bp)
TACAGAGCGAAGGAAGGGAGCACCA
LOC_Os05g23590
OsAffx.14790.1.S1_at--260--2671Chr05:13450047..13450071 (25 bp)
AAGGAAGGGAGCACCACCCACGGTG
LOC_Os05g23590
Target Sequence 
CCGCGCAGATGGTCACGTTGTCCAACCTCTGCGATGAGGACGAGGATGAGGGCGAGGGCGGTGGTCGCCGCAAGCTGGCT
CCTACCGCGGTGGTGTTGGGGAGGCGCCTCACGCTACTGGACGTCATCCGGCGTCGACTAGCCTCCGTGGAGGTCGAGGA
CAAAGATACAGAGCGAAGGAAGGGAGCACCACCCACGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis