Browse Element(s) Details


OsAffx.14857.1.S1_at

Description tigr:9633.m02556
TID=OsAffx.14857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2800011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27960Os.7077.1.S1_at11/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27960Os.27744.1.S1_at1/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27970OsAffx.27050.1.S1_x_at11/115+16242826..16243626hypothetical protein
LOC_Os05g27980OsAffx.4449.1.S1_at11/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27980OsAffx.3523.1.S1_x_at1/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27990Os.26886.2.S1_s_at5/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.6.S1_s_at4/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990OsAffx.16467.1.S1_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.3.S1_x_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28000OsAffx.14857.1.S1_at11/115+16263603..16264230hypothetical protein
LOC_Os05g28010Os.56148.1.S1_at8/115+16265851..16268412TAFII55 protein conserved region containing protein, expressed
LOC_Os05g28020NANA5+16273700..16273903hypothetical protein
LOC_Os05g28040Os.54655.1.S1_at11/115+16284626..16285861expressed protein
LOC_Os05g28040OsAffx.27237.1.S1_x_at1/115+16284626..16285861expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14857.1.S1_at--813--8591Chr05:16263659..16263683 (25 bp)
TGGTGCCCATGAGCACCTATGGTCC
LOC_Os05g28000
OsAffx.14857.1.S1_at--846--5931Chr05:16263669..16263693 (25 bp)
GAGCACCTATGGTCCCTTGTGCTTG
LOC_Os05g28000
OsAffx.14857.1.S1_at--1029--1751Chr05:16263705..16263729 (25 bp)
ACCTCCGCCTTGATGTCGGTGTGGC
LOC_Os05g28000
OsAffx.14857.1.S1_at--475--4111Chr05:16263775..16263799 (25 bp)
CGAAGGTGGTCGATGTTAAGGAACA
LOC_Os05g28000
OsAffx.14857.1.S1_at--424--8151Chr05:16263794..16263818 (25 bp)
GGAACAACTTCTAGTGACCAAGGTA
LOC_Os05g28000
OsAffx.14857.1.S1_at--559--8531Chr05:16263826..16263850 (25 bp)
TGGAGGAACATGACACTGAGGACAT
LOC_Os05g28000
OsAffx.14857.1.S1_at--670--8131Chr05:16263845..16264023 (25 bp)
GGACATAGATCCAGCTTGGCTAGAA
LOC_Os05g28000
OsAffx.14857.1.S1_at--1139--8291Chr05:16264016..16264040 (25 bp)
GGCTAGAATGGGAACCACCACCAAA
LOC_Os05g28000
OsAffx.14857.1.S1_at--162--2431Chr05:16264038..16264062 (25 bp)
AAAACTCATAGGTGGTGCGGCTAGT
LOC_Os05g28000
OsAffx.14857.1.S1_at--215--1471Chr05:16264068..16264092 (25 bp)
AGAAGTGGCTGTAGCTGCCCATGGC
LOC_Os05g28000
OsAffx.14857.1.S1_at--450--8151Chr05:16264146..16264170 (25 bp)
GGAAATTGTCGATAGCGCGCGCGAA
LOC_Os05g28000
Target Sequence 
TGGTGCCCATGAGCACCTATGGTCCCTTGTGCTTGCTAGCAGCTCCACCTCCGCCTTGATGTCGGTGTGGCGGATGCCGA
GCACAAGAAGGTTGGGGAAGATGTCAGCGCGCGGGGCGAAGGTGGTCGATGTTAAGGAACAACTTCTAGTGACCAAGGTA
GAGGCGGTGGAGGAACATGACACTGAGGACATAGATCCAGCTTGGCTAGAATGGGAACCACCACCAAAACTCATAGGTGG
TGCGGCTAGTGACAAAGAAGTGGCTGTAGCTGCCCATGGCTTGCCACTCCGGTCACCGGTGGTGGGAGAGGGTCACCGGG
GCGAGGGAGAGAAGGAAATTGTCGATAGCGCGCGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis