Browse Element(s) Details


OsAffx.14988.2.S1_x_at

Description tigr:9633.m00184
TID=OsAffx.14988.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0270011/11hypothetical protein
LOC_Os05g369806/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein
LOC_Os05g02659NANA5+916299..918515NA
LOC_Os05g02670Os.8746.1.S1_at11/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02670Os.49274.1.S1_at1/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02680Os.15787.1.S1_at11/115+925800..930293expressed protein
LOC_Os05g02690Os.10808.1.S1_at10/115+934047..935073expressed protein
LOC_Os05g02700OsAffx.14988.2.S1_x_at11/115+936510..937575hypothetical protein
LOC_Os05g02710NANA5+952049..953330transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g02720OsAffx.26698.1.S1_at11/115+953564..954816hypothetical protein
LOC_Os05g02730NANA5+955957..956777Homeobox domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14988.2.S1_x_at--507--8433Chr11:2445668..2445934 (25 bp)
GGCCTCCTCCAGGTGAGCGCATTGG
NONE
OsAffx.14988.2.S1_x_at--193--4293Chr07:18845430..18845696 (25 bp)
CCTCCTCCAGGTGAGCGCATTGGAT
NONE
OsAffx.14988.2.S1_x_at--507--33Chr11:2445648..2445672 (25 bp)
ATTGGATGCGTTCCCACGTCGCGGT
NONE
OsAffx.14988.2.S1_x_at--1153--1892Chr05:21518199..21518223 (25 bp)
ACGTCGCGGTACAATCGCGTCCATC
LOC_Os05g36980
OsAffx.14988.2.S1_x_at--801--4054Chr11:2445450..2445602 (25 bp)
CGATCGCCAAGCTCGTCGTGTGCAA
NONE
OsAffx.14988.2.S1_x_at--51--9031Chr05:936959..936983 (25 bp)
TGCAACCCCATGATCGGTGAAATGG
LOC_Os05g02700
OsAffx.14988.2.S1_x_at--1011--4133Chr07:18844917..18844941 (25 bp)
CGCCGCCGGCAATCCGAAGGACGAT
NONE
OsAffx.14988.2.S1_x_at--1049--1875Chr11:2445132..2445156 (25 bp)
ACGATGGGGGAGATTCGCCGCCCTC
NONE
OsAffx.14988.2.S1_x_at--1043--4773Chr11:2445090..2445114 (25 bp)
GCTGCGGGAGAATGGCTGGCGCGCC
NONE
OsAffx.14988.2.S1_x_at--132--7653Chr11:2445085..2445109 (25 bp)
GGGAGAATGGCTGGCGCGCCGCGAC
NONE
OsAffx.14988.2.S1_x_at--958--9092Chr05:936543..936567 (25 bp)
TGCTCCATCGGCCAGAGAGAGAGAA
LOC_Os05g02700
Target Sequence 
GGCCTCCTCCAGGTGAGCGCATTGGATGCGTTCCCACGTCGCGGTACAATCGCGTCCATCCCCACGATCCTAACAACGTG
CTCACGCCTCCGATCGCCAAGCTCGTCGTGTGCAACCCCATGATCGGTGAAATGGCCATCCTCCTCCCCGTCCTCTCCGG
GAAGGACAGGCTCGGGCTCTACGCGTGCGCGCTGCTCACCACCGACGATCTCCAGGACTCCGCCGATCCGCTCCCACCGG
GTCCCGCTGCCTTCCGCCTGTTGGTCCTCTACAAGCGCCGTAGCTTCACGGCGTGCCGGTCCTACTCGTCGGACACCAAG
GCCTGGAGCACCGAGCGCAAGCTATCCGGCGGGACGGACCTCACCACGGGGGCGGGGCTAGCCACCACCGCCGCCGGCAA
TCCGAAGGACGATGGGGGAGATTCGCCGCCCTCCCCGCGAAGAAGGAGGCGCTGCGGGAGAATGGCTGGCGCGCCGCGAC
CTGACCCGCCGTCGGCCACGCCTGGCCCGTCGCCCGCCGCTCGCCCTGCTCCATCGGCCAGAGAGAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14988.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis