Browse Element(s) Details


OsAffx.15007.1.S1_at

Description tigr:9633.m03532
TID=OsAffx.15007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable bHLH transcription factor (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3814010/11bHLH transcription factor, putative, expressed
LOC_Os09g314901/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38110Os.28943.1.S1_x_at4/115+22261925..22264978retrotransposon protein, putative, unclassified
LOC_Os05g38120Os.27308.1.S1_at11/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38120Os.7393.1.S1_at1/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38130OsAffx.27218.1.S1_at9/115+22284122..22284778expressed protein
LOC_Os05g38140Os.49628.1.S1_at11/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38140OsAffx.15007.1.S1_at10/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38150Os.12281.1.S1_at10/115+22290843..22297634Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os05g38160Os.4768.1.S1_at11/115+22300952..22304621prenylated rab acceptor, putative, expressed
LOC_Os05g38170Os.14297.1.S1_at11/115+22304766..22309272Uracil phosphoribosyltransferase, putative, expressed
LOC_Os05g38180Os.35939.1.S1_at11/115+22310793..22313901Yip1 domain containing protein, expressed
LOC_Os05g38190NANA5+22314953..22317577pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15007.1.S1_at--950--8131Chr05:22288538..22288561 (24 bp)
GGACAACTCTGCCTCCAAGAAAAGA
LOC_Os05g38140
OsAffx.15007.1.S1_at--203--4471NONE
GCCTCCAAGAAAAGATCTCGTCCAG
NONE
OsAffx.15007.1.S1_at--87--1291Chr05:22289404..22289428 (25 bp)
AGATCTCGTCCAGAATCGAGCGCAC
LOC_Os05g38140
OsAffx.15007.1.S1_at--47--7611Chr05:22289433..22289457 (25 bp)
GGGCACCAAGGCTTGCCGCGAAAAG
LOC_Os05g38140
OsAffx.15007.1.S1_at--679--2931Chr05:22289440..22289464 (25 bp)
AAGGCTTGCCGCGAAAAGCTCCGGC
LOC_Os05g38140
OsAffx.15007.1.S1_at--464--2431Chr05:22289453..22289477 (25 bp)
AAAAGCTCCGGCGAGACAGGCTCAA
LOC_Os05g38140
OsAffx.15007.1.S1_at--850--4791Chr05:22289457..22289481 (25 bp)
GCTCCGGCGAGACAGGCTCAATGAA
LOC_Os05g38140
OsAffx.15007.1.S1_at--314--4072Chr05:22289464..22289484 (21 bp)
CGAGACAGGCTCAATGAAAGGTTCA
LOC_Os05g38140
OsAffx.15007.1.S1_at--1155--2991Chr05:22289476..22289595 (25 bp)
AATGAAAGGTTCAACGAGCTCAGCG
LOC_Os05g38140
OsAffx.15007.1.S1_at--1074--5891Chr05:22289586..22289610 (25 bp)
GAGCTCAGCGCGATCTTGGAGCCCG
LOC_Os05g38140
OsAffx.15007.1.S1_at--331--1651Chr05:22289592..22289616 (25 bp)
AGCGCGATCTTGGAGCCCGGCAAGC
LOC_Os05g38140
Target Sequence 
GGACAACTCTGCCTCCAAGAAAAGATCTCGTCCAGAATCGAGCGCACCGCCGGGCACCAAGGCTTGCCGCGAAAAGCTCC
GGCGAGACAGGCTCAATGAAAGGTTCAACGAGCTCAGCGCGATCTTGGAGCCCGGCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis