Browse Element(s) Details


OsAffx.15023.1.S1_at

Description tigr:9633.m03646
TID=OsAffx.15023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3920010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39140Os.12242.1.S1_at11/115+22872129..22877626expressed protein
LOC_Os05g39140Os.48582.1.A1_s_at10/115+22872129..22877626expressed protein
LOC_Os05g39150Os.51909.1.S1_at11/115+22878075..22881251expressed protein
LOC_Os05g39160OsAffx.27234.2.S1_at11/115+22882724..22883992hypothetical protein
LOC_Os05g39170OsAffx.27234.1.S1_at11/115+22887046..22888595hypothetical protein
LOC_Os05g39180Os.50520.1.S1_at11/115+22891311..22894850expressed protein
LOC_Os05g39190Os.54521.1.S1_at11/115+22895418..22898968expressed protein
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein
LOC_Os05g39210Os.56330.1.S1_at11/115+22905044..22908281expressed protein
LOC_Os05g39220Os.52081.1.S1_at10/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39220OsAffx.23696.1.S1_x_at1/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39230Os.8138.1.S1_at11/115+22913774..22922353expressed protein
LOC_Os05g39240Os.20364.1.S1_at11/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39240Os.54723.1.S1_at1/115+22926028..22930243Ammonium transporter 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15023.1.S1_at--843--5811Chr05:22901702..22901726 (25 bp)
GAGCCGTTCGAGCTAAACTCCTTCG
LOC_Os05g39200
OsAffx.15023.1.S1_at--708--10851Chr05:22901777..22901801 (25 bp)
TTGGCTGACGGGAGACAGCTCTGCC
LOC_Os05g39200
OsAffx.15023.1.S1_at--463--5751Chr05:22901804..22901828 (25 bp)
GACGGAAGCCACATCTTCGCGGAGG
LOC_Os05g39200
OsAffx.15023.1.S1_at--276--4691Chr05:22901822..22901846 (25 bp)
GCGGAGGCGCCGTTCATCTGTTGCA
LOC_Os05g39200
OsAffx.15023.1.S1_at--1010--471Chr05:22901837..22901861 (25 bp)
ATCTGTTGCATCGATCCGCTTAAAG
LOC_Os05g39200
OsAffx.15023.1.S1_at--55--10491Chr05:22901856..22901880 (25 bp)
TTAAAGGCAACGTCGTGTACCTCAT
LOC_Os05g39200
OsAffx.15023.1.S1_at--126--4491Chr05:22901882..22901906 (25 bp)
GCCGGTCCAGGCAACCAGGTGGTTA
LOC_Os05g39200
OsAffx.15023.1.S1_at--306--1691Chr05:22901895..22901919 (25 bp)
ACCAGGTGGTTATCGGCGTGGACAT
LOC_Os05g39200
OsAffx.15023.1.S1_at--1126--6771Chr05:22901950..22901974 (25 bp)
GTTAGACCAACTCAACTGGCTGACA
LOC_Os05g39200
OsAffx.15023.1.S1_at--760--4491Chr05:22901989..22902013 (25 bp)
GCCGTGGCTTGGATCATGCCAGATT
LOC_Os05g39200
OsAffx.15023.1.S1_at--975--4411NONE
GCCAGATTCCTTCTTCAGGCAAGAA
NONE
Target Sequence 
GAGCCGTTCGAGCTAAACTCCTTCGTTCTCGACGAAGCGGGCAACCGCTGGACGCTGGTGTCCAGCGGGGAGCCCTTGGC
TGACGGGAGACAGCTCTGCCCGGACGGAAGCCACATCTTCGCGGAGGCGCCGTTCATCTGTTGCATCGATCCGCTTAAAG
GCAACGTCGTGTACCTCATGGCCGGTCCAGGCAACCAGGTGGTTATCGGCGTGGACATGGAGACGGGGTTGGTGACTGGG
GCCACTCTGTTAGACCAACTCAACTGGCTGACACCCTGCTTGCTCCCGCCGTGGCTTGGATCATGCCAGATTCCTTCTTC
AGGCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis