Browse Element(s) Details


OsAffx.15075.1.S1_at

Description tigr:9633.m03998
TID=OsAffx.15075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY133660 At1g59710T30E16_31
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4305011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43000NANA5+24892300..24895083retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43010NANA5+24895726..24898395retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43020OsAffx.21897.5.S1_x_at4/115+24898712..24901653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43030Os.54570.1.S1_at11/115+24903821..24906332expressed protein
LOC_Os05g43040Os.2245.1.S1_at11/115+24914112..24916352beta-9 tubulin, putative, expressed
LOC_Os05g43050OsAffx.15075.1.S1_at11/115+24917080..24918281hypothetical protein
LOC_Os05g43050Os.4009.1.S1_at1/115+24917080..24918281hypothetical protein
LOC_Os05g43060Os.26435.1.A1_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060Os.26381.3.S1_x_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_x_at9/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_at1/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43070OsAffx.4602.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070OsAffx.27287.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070Os.41554.1.S1_at1/115+24932262..24937267hypothetical protein
LOC_Os05g43080OsAffx.27288.1.S1_x_at11/115+24938947..24939275hypothetical protein
LOC_Os05g43090OsAffx.4603.1.S1_at11/115+24939517..24940801GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g43100OsAffx.15076.1.S1_at11/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43100OsAffx.2812.1.S1_at1/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15075.1.S1_at--206--5631Chr05:24917714..24917738 (25 bp)
GACACGGCGTTCACTACTGCTTTCG
LOC_Os05g43050
OsAffx.15075.1.S1_at--833--6751Chr05:24917706..24917730 (25 bp)
GTTCACTACTGCTTTCGTCAGATTC
LOC_Os05g43050
OsAffx.15075.1.S1_at--808--4011Chr05:24917693..24917715 (23 bp)
CGTCAGATTCTATTCCGCCAAGGAA
LOC_Os05g43050
OsAffx.15075.1.S1_at--811--8611Chr05:24917486..24917510 (25 bp)
TGGTGGCGCGGACGATCTTCTACAA
LOC_Os05g43050
OsAffx.15075.1.S1_at--137--5771Chr05:24917476..24917500 (25 bp)
GACGATCTTCTACAACACGGCGAGA
LOC_Os05g43050
OsAffx.15075.1.S1_at--518--9891Chr05:24917409..24917433 (25 bp)
TACTTCACGTTCAAGGAGCAGAGCC
LOC_Os05g43050
OsAffx.15075.1.S1_at--1053--4151Chr05:24917349..24917373 (25 bp)
CGCCGGGAGGACTTCGTCGTCTGCC
LOC_Os05g43050
OsAffx.15075.1.S1_at--305--1351Chr05:24917259..24917283 (25 bp)
AGAGACATGGAGTTCGTCCTCGTCT
LOC_Os05g43050
OsAffx.15075.1.S1_at--1043--7131Chr05:24917133..24917262 (25 bp)
GTCTTGCACTCCTCCAGAGTGGCGA
LOC_Os05g43050
OsAffx.15075.1.S1_at--421--9231Chr05:24917121..24917250 (25 bp)
TCCAGAGTGGCGAGTGCTCTTCAAT
LOC_Os05g43050
OsAffx.15075.1.S1_at--288--4071Chr05:24917111..24917135 (25 bp)
CGAGTGCTCTTCAATTTCCATTTGG
LOC_Os05g43050
Target Sequence 
GACACGGCGTTCACTACTGCTTTCGTCAGATTCTATTCCGCCAAGGAATTGAAGGTGGTGAAGCCGCCGCCGCCGCCGGA
GGAGGGGGAGGAGGAGGAGGAGCCGCCGAGCGAGGCGGCGCCGGGCGCGCTGGTGGCGCGGACGATCTTCTACAACACGG
CGAGAGACGACGGCCGCGTGGACGACTTCGACCAGGGGACGTGGAGGTACTTCACGTTCAAGGAGCAGAGCCTCGCGGCG
CTGCGCCGGCGGCTGGAGGAGGAGGCGCGCCGGGAGGACTTCGTCGTCTGCCGCCGGAGGTGCGCCGCGCCGCCGCCGGG
GCTGTTCCCCGTCGTCCTCGACCTCCCCCCCGGCAACAGAGACATGGAGTTCGTCCTCGTCTTGCACTCCTCCAGAGTGG
CGAGTGCTCTTCAATTTCCATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis