Browse Element(s) Details


OsAffx.15095.1.S1_at

Description tigr:9633.m04089
TID=OsAffx.15095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4389011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43860Os.15784.1.A1_s_at11/115+25419871..25422735expressed protein
LOC_Os05g43860OsAffx.15091.1.S1_at9/115+25419871..25422735expressed protein
LOC_Os05g43870OsAffx.15092.1.S1_at11/115+25424969..25427337expressed protein
LOC_Os05g43880OsAffx.15093.1.S1_x_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43880OsAffx.15093.1.S1_s_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43890OsAffx.15095.1.S1_at11/115+25443704..25444056hypothetical protein
LOC_Os05g43900NANA5+25455034..25455941hypothetical protein
LOC_Os05g43910Os.51231.1.S1_at11/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910OsAffx.24230.1.S1_x_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910Os.54620.1.A1_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910OsAffx.24230.1.S1_at1/115+25460016..25463202Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15095.1.S1_at--676--4371Chr05:25443756..25443780 (25 bp)
CCAAATCCGCGCGTGTTGTGCTGAA
LOC_Os05g43890
OsAffx.15095.1.S1_at--178--3051Chr05:25443759..25443783 (25 bp)
AATCCGCGCGTGTTGTGCTGAATTC
LOC_Os05g43890
OsAffx.15095.1.S1_at--17--4011Chr05:25443767..25443791 (25 bp)
CGTGTTGTGCTGAATTCGCCTGTGT
LOC_Os05g43890
OsAffx.15095.1.S1_at--1133--10811Chr05:25443771..25443795 (25 bp)
TTGTGCTGAATTCGCCTGTGTGGCC
LOC_Os05g43890
OsAffx.15095.1.S1_at--363--9011Chr05:25443777..25443801 (25 bp)
TGAATTCGCCTGTGTGGCCAGATTC
LOC_Os05g43890
OsAffx.15095.1.S1_at--1081--4471Chr05:25443784..25443808 (25 bp)
GCCTGTGTGGCCAGATTCCAGATTT
LOC_Os05g43890
OsAffx.15095.1.S1_at--548--8451Chr05:25443791..25443815 (25 bp)
TGGCCAGATTCCAGATTTCCCGAGA
LOC_Os05g43890
OsAffx.15095.1.S1_at--977--6571Chr05:25443797..25443821 (25 bp)
GATTCCAGATTTCCCGAGATCGGTG
LOC_Os05g43890
OsAffx.15095.1.S1_at--562--1251Chr05:25443803..25443827 (25 bp)
AGATTTCCCGAGATCGGTGTGAAGG
LOC_Os05g43890
OsAffx.15095.1.S1_at--59--6331Chr05:25443829..25443853 (25 bp)
GATGAATCGGGTTCATGACACACCA
LOC_Os05g43890
OsAffx.15095.1.S1_at--543--5251Chr05:25443832..25443856 (25 bp)
GAATCGGGTTCATGACACACCAGCT
LOC_Os05g43890
Target Sequence 
CCAAATCCGCGCGTGTTGTGCTGAATTCGCCTGTGTGGCCAGATTCCAGATTTCCCGAGATCGGTGTGAAGGTGATGAAT
CGGGTTCATGACACACCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis