Browse Element(s) Details


OsAffx.15176.1.S1_at

Description tigr:9633.m04714
TID=OsAffx.15176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Homeobox associated leucine zipper, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5013010/11Homeobox associated leucine zipper family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50090OsAffx.15175.2.A1_at10/115+28622415..28625251oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g50100Os.55247.1.S1_at10/115+28627048..28627954expressed protein
LOC_Os05g50110Os.55591.1.S1_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50110Os.51746.1.S1_s_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative
LOC_Os05g50150NANA5+28656100..28656375hypothetical protein
LOC_Os05g50160OsAffx.27391.1.S1_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.27391.1.S1_x_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.23670.1.S1_x_at2/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50170Os.52893.1.S1_at11/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_x_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50180Os.8889.1.S1_at11/115+28674633..28675422EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15176.1.S1_at--1036--3071NONE
AATCACACAGTTGATTCCACCAGTC
NONE
OsAffx.15176.1.S1_at--371--1731Chr05:28650018..28650042 (25 bp)
ACCAGTCACTTACGCTCTAGGAAAT
LOC_Os05g50130
OsAffx.15176.1.S1_at--840--8251Chr05:28650077..28650101 (25 bp)
GGCAGATCGACTGAATCTTCGGATA
LOC_Os05g50130
OsAffx.15176.1.S1_at--675--9631Chr05:28650104..28650128 (25 bp)
TCAGGTGGATGCTTGGTTCCGCAAC
LOC_Os05g50130
OsAffx.15176.1.S1_at--1065--6671Chr05:28650119..28650139 (21 bp)
GTTCCGCAACCGCAGGTTAAGTCAT
LOC_Os05g50130
OsAffx.15176.1.S1_at--439--791Chr05:28650461..28650485 (25 bp)
ATGTGGGTCTCACCTTTCTATTACC
LOC_Os05g50130
OsAffx.15176.1.S1_at--165--9971Chr05:28650482..28650506 (25 bp)
TACCCCACATGTCGGTGTCTGTAGA
LOC_Os05g50130
OsAffx.15176.1.S1_at--75--2231Chr05:28650587..28650611 (25 bp)
ACAAGTTCAGAGTTCATCATCCGCC
LOC_Os05g50130
OsAffx.15176.1.S1_at--997--831Chr05:28650723..28650747 (25 bp)
ATGGAGTGCGCCTATCTGAAGGAAT
LOC_Os05g50130
OsAffx.15176.1.S1_at--994--9631Chr05:28650802..28650826 (25 bp)
TCAGGTCAACGAGCTTGCAGCTGCA
LOC_Os05g50130
OsAffx.15176.1.S1_at--157--9691Chr05:28650910..28650934 (25 bp)
TCACTTTGCCTTTGTCCGGATACAA
LOC_Os05g50130
Target Sequence 
AATCACACAGTTGATTCCACCAGTCACTTACGCTCTAGGAAATTAATGGAACATTTTCAGAAACAAAAGAAGGAGTTGGC
AGATCGACTGAATCTTCGGATAAGTCAGGTGGATGCTTGGTTCCGCAACCGCAGGTTAAGTCATTATTATGTGGGTCTCA
CCTTTCTATTACCCCACATGTCGGTGTCTGTAGAGGATGTGAACCCAATGATTCCACAGTACAAATCAGTTAGCAGTGTA
GAACAAGTTCAGAGTTCATCATCCGCCCCAGTGACTGTTATGCTATTACTAGTAATACCTTTCAGATTAATCTTCACAAA
CCTACAGTCGAAGCAGAAATCCACGGAGATGGAGTGCGCCTATCTGAAGGAATGCTTCAACAAACTGAAAGAGGAGAACC
ACCGCCTCCAGCTCCAGGTTGAGCAGCTCAGGTCAACGAGCTTGCAGCTGCAGCTGCAGCTGCAACTCCACAGCGAGCGA
GTCGCCACAGCTCCCACTGGACAGCAAGCCGGCACTTCTGCGGCTGCTCGCATCTTCACTTTGCCTTTGTCCGGATACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis