Browse Element(s) Details


OsAffx.15183.1.S1_at

Description tigr:9633.m04763
TID=OsAffx.15183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5059010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50530OsAffx.19258.2.S1_x_at10/115+28893468..28896400hypothetical protein
LOC_Os05g50530OsAffx.24518.2.S1_x_at2/115+28893468..28896400hypothetical protein
LOC_Os05g50530Os.57200.1.S1_x_at1/115+28893468..28896400hypothetical protein
LOC_Os05g50540Os.28943.1.S1_x_at4/115+28896949..28898187retrotransposon protein, putative, unclassified
LOC_Os05g50550Os.18305.1.S2_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50550Os.18305.1.S1_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50560Os.52787.1.S1_at7/115+28906389..28912094mitogen-activated protein kinase, putative, expressed
LOC_Os05g50570Os.53101.1.S1_at10/115+28912701..28914261Serine carboxypeptidase family protein, expressed
LOC_Os05g50580Os.56284.1.S1_at11/115+28916940..28918772Serine carboxypeptidase family protein, expressed
LOC_Os05g50590OsAffx.15183.1.S1_at10/115+28918822..28919562hypothetical protein
LOC_Os05g50600Os.27648.1.S1_at11/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50600Os.45963.1.S1_x_at1/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50610Os.29987.2.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.29987.1.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.43567.1.S1_x_at5/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.53217.1.S1_x_at4/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.38172.1.S1_x_at2/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50624Os.51355.1.S1_at11/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50624Os.7726.1.S1_at9/115+28938490..28940826hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15183.1.S1_at--710--3391Chr05:28919133..28919157 (25 bp)
CAGCTGTATCCAATGGCCAATGGTG
LOC_Os05g50590
OsAffx.15183.1.S1_at--711--9191NONE
TCCAATGGCCAATGGTGTACAGGGT
NONE
OsAffx.15183.1.S1_at--482--4151Chr05:28919073..28919097 (25 bp)
CGCGTCACGGAGATGCGGCACCGCT
LOC_Os05g50590
OsAffx.15183.1.S1_at--318--611Chr05:28919061..28919085 (25 bp)
ATGCGGCACCGCTGCTCCAAGGGAT
LOC_Os05g50590
OsAffx.15183.1.S1_at--417--1791Chr05:28919054..28919078 (25 bp)
ACCGCTGCTCCAAGGGATTGGGCCG
LOC_Os05g50590
OsAffx.15183.1.S1_at--970--4571Chr05:28918988..28919012 (25 bp)
GCGCTTCGGCTCTAAGGAACCGAGC
LOC_Os05g50590
OsAffx.15183.1.S1_at--204--3711Chr05:28918978..28919002 (25 bp)
TCTAAGGAACCGAGCCGGTACCGCG
LOC_Os05g50590
OsAffx.15183.1.S1_at--988--7531Chr05:28918954..28918978 (25 bp)
GTGGCCCTCTCCTGTTCCGCGGGAG
LOC_Os05g50590
OsAffx.15183.1.S1_at--791--5871Chr05:28918932..28918956 (25 bp)
GAGCGCGCCGGTTCCGTTTGTCTAA
LOC_Os05g50590
OsAffx.15183.1.S1_at--962--9271Chr05:28918920..28918944 (25 bp)
TCCGTTTGTCTAAGCCGCGGGACCG
LOC_Os05g50590
OsAffx.15183.1.S1_at--835--9791Chr05:28918910..28918934 (25 bp)
TAAGCCGCGGGACCGACGCTGTCTA
LOC_Os05g50590
Target Sequence 
CAGCTGTATCCAATGGCCAATGGTGTACAGGGTGCTGGGGGAGGGCGTCGCCAGCGGTCCCGCGTCACGGAGATGCGGCA
CCGCTGCTCCAAGGGATTGGGCCGGCCGGTGCCGCGCAACCATCCAGCGGGACCGAGCCGGTGCCGCGCTTCGGCTCTAA
GGAACCGAGCCGGTACCGCGTGGCCCTCTCCTGTTCCGCGGGAGCGCGCCGGTTCCGTTTGTCTAAGCCGCGGGACCGAC
GCTGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis