Browse Element(s) Details


OsAffx.15192.1.S1_at

Description tigr:9633.m04843
TID=OsAffx.15192.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5135011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51300OsAffx.27015.1.S1_at11/115+29344790..29347421AC transposase, putative
LOC_Os05g51300OsAffx.27015.1.S1_x_at11/115+29344790..29347421AC transposase, putative
LOC_Os05g51300Os.53746.1.S1_x_at1/115+29344790..29347421AC transposase, putative
LOC_Os05g51310NANA5+29349319..29352505retrotransposon protein, putative, unclassified
LOC_Os05g51320OsAffx.20387.1.S1_x_at3/115+29352960..29356729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51330NANA5+29357492..29360518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51340Os.26455.2.S1_s_at11/115+29362102..29363633hypothetical protein
LOC_Os05g51340OsAffx.15191.1.S1_at10/115+29362102..29363633hypothetical protein
LOC_Os05g51340OsAffx.32331.1.S1_x_at1/115+29362102..29363633hypothetical protein
LOC_Os05g51350OsAffx.15192.1.S1_at11/115+29365917..29367278Eukaryotic aspartyl protease family protein
LOC_Os05g51360Os.50191.1.S1_at10/115+29372287..29373866dnaK protein, expressed
LOC_Os05g51370OsAffx.4684.1.S1_at11/115+29374916..29375964hypothetical protein
LOC_Os05g51380Os.38282.1.S1_at11/115+29376716..29381572expressed protein
LOC_Os05g51380Os.51194.1.A1_x_at1/115+29376716..29381572expressed protein
LOC_Os05g51380Os.18659.1.S1_s_at1/115+29376716..29381572expressed protein
LOC_Os05g51390OsAffx.15193.1.S1_at11/115+29387196..29390727Lysine Decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15192.1.S1_at--907--10611Chr05:29366678..29366702 (25 bp)
TTCGATAGGGATGACCGGCCTCACT
LOC_Os05g51350
OsAffx.15192.1.S1_at--12--7111Chr05:29366703..29366727 (25 bp)
GTCACTGTCAATGGCGAGGTCCGCT
LOC_Os05g51350
OsAffx.15192.1.S1_at--1095--5591Chr05:29366792..29366816 (25 bp)
GAAATTGACCTTACTGTTGGCCTCC
LOC_Os05g51350
OsAffx.15192.1.S1_at--321--411Chr05:29366841..29366865 (25 bp)
ATCATCCCAGCAATGGAGTCTCTTG
LOC_Os05g51350
OsAffx.15192.1.S1_at--42--6111Chr05:29366856..29366880 (25 bp)
GAGTCTCTTGGCTATTCACTCAACA
LOC_Os05g51350
OsAffx.15192.1.S1_at--4--1571Chr05:29366899..29366923 (25 bp)
AGCTTTGCTTTCTCACCGAGAGTGA
LOC_Os05g51350
OsAffx.15192.1.S1_at--793--7351Chr05:29366920..29366944 (25 bp)
GTGACAGACAAAACTACCTCCAGCG
LOC_Os05g51350
OsAffx.15192.1.S1_at--632--8591Chr05:29366967..29366991 (25 bp)
TGGTCAGCTTTACCTGTGTTTCACA
LOC_Os05g51350
OsAffx.15192.1.S1_at--1019--5671Chr05:29367017..29367041 (25 bp)
GACATTGCCTCCCAAGAATGCATTT
LOC_Os05g51350
OsAffx.15192.1.S1_at--461--10451Chr05:29367041..29367065 (25 bp)
TTACCTCGATGCTAGATACCGTCAA
LOC_Os05g51350
OsAffx.15192.1.S1_at--446--8511Chr05:29367221..29367245 (25 bp)
TGGAATCACTTATGACATCCCGCGC
LOC_Os05g51350
Target Sequence 
TTCGATAGGGATGACCGGCCTCACTGTCACTGTCAATGGCGAGGTCCGCTCGTTGGTCTCCGGCTCCGGCTCCAGCCCCA
GCCCCTCCTCACTGATGGTCGTCGACTCTGGGGCGAAATTGACCTTACTGTTGGCCTCCACCTTCGGTCAACTAGAGGAT
GCAATCATCCCAGCAATGGAGTCTCTTGGCTATTCACTCAACACTGCTGCCGGCCAAAACCAGCTTTGCTTTCTCACCGA
GAGTGACAGACAAAACTACCTCCAGCGCAAACCTCCACCTCCCAGCAATTGGTCAGCTTTACCTGTGTTTCACATCTCCT
TTACCCTCGGTCTCACGCTGACATTGCCTCCCAAGAATGCATTTTACCTCGATGCTAGATACCGTCAAGAATTCCTGACT
ATTGCATGGAAACAGATTTATGTTAGAAGTATTTTTCCTTTCCAATATTTTTCTGACATTCTTGGACTGTGCTCCTCCTT
TGCTCGCGACGACTACTTGGAGTCTGGTTATCAGATATTGGGGAACTTGGTCACAAAATCGTGTGGAATCACTTATGACA
TCCCGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis