Browse Element(s) Details


OsAffx.15258.1.S1_at

Description tigr:9634.m00344
TID=OsAffx.15258.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0431011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04260NANA6+1804377..1806604expressed protein
LOC_Os06g04270Os.609.1.S2_a_at11/116+1807790..1811336Transketolase, chloroplast precursor, putative, expressed
LOC_Os06g04280Os.3416.1.S1_at11/116+1815180..18187993-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280Os.3416.2.S1_x_at11/116+1815180..18187993-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280Os.3416.1.S1_a_at11/116+1815180..18187993-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04290Os.7.3.S1_x_at11/116+1819087..182102840S ribosomal protein S20, putative, expressed
LOC_Os06g04290Os.7.1.S1_x_at11/116+1819087..182102840S ribosomal protein S20, putative, expressed
LOC_Os06g04290Os.7.1.S1_a_at11/116+1819087..182102840S ribosomal protein S20, putative, expressed
LOC_Os06g04300Os.7.2.S1_at11/116+1821808..1825370RNA 2'-phosphotransferase, Tpt1/KptA family protein, expressed
LOC_Os06g04310OsAffx.15258.1.S1_at11/116+1827170..1830737hypothetical protein
LOC_Os06g04320Os.57388.1.S1_at11/116+1832130..1837026hypothetical protein
LOC_Os06g04320OsAffx.15259.1.S1_at7/116+1832130..1837026hypothetical protein
LOC_Os06g04330Os.34404.1.S1_at11/116+1837613..1841800expressed protein
LOC_Os06g04340NANA6+1843992..1847536expressed protein
LOC_Os06g04350OsAffx.4717.1.S1_at10/116+1849165..1852812expressed protein
LOC_Os06g04350Os.51695.1.S1_at2/116+1849165..1852812expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15258.1.S1_at--1149--4751Chr06:1829787..1829811 (25 bp)
GCTGCTACTGAGTCCCATTACAAAA
LOC_Os06g04310
OsAffx.15258.1.S1_at--486--8611Chr06:1829758..1829782 (25 bp)
TGGTGCTTTATCTATCCCCAAGGAG
LOC_Os06g04310
OsAffx.15258.1.S1_at--1036--6131Chr06:1829727..1829751 (25 bp)
GAGGTGACTTTATCCATTGATGACT
LOC_Os06g04310
OsAffx.15258.1.S1_at--737--6311Chr06:1829709..1829733 (25 bp)
GATGACTACGTCAGCCAGTACAATA
LOC_Os06g04310
OsAffx.15258.1.S1_at--1010--9111Chr06:1827527..1827551 (25 bp)
TGCTGCAGAAGATCCTGGCCTTGAG
LOC_Os06g04310
OsAffx.15258.1.S1_at--153--8871Chr06:1827506..1827530 (25 bp)
TGAGGGCATGCGCTATAAAATCTAT
LOC_Os06g04310
OsAffx.15258.1.S1_at--656--10151Chr06:1827387..1827411 (25 bp)
TATCTAGCAACTTCAGGACCACCAA
LOC_Os06g04310
OsAffx.15258.1.S1_at--629--6051Chr06:1827355..1827379 (25 bp)
GAGATTTACTCCTACGAGCCTAACA
LOC_Os06g04310
OsAffx.15258.1.S1_at--690--6171Chr06:1827316..1827340 (25 bp)
GAGGATGGAGTCACACGTTCCCATT
LOC_Os06g04310
OsAffx.15258.1.S1_at--485--10651Chr06:1827299..1827323 (25 bp)
TTCCCATTGTGTCCTGGTGGTCGGA
LOC_Os06g04310
OsAffx.15258.1.S1_at--819--4871Chr06:1827204..1827228 (25 bp)
GCTTTGGCCGTGTCTATCTCAAGGA
LOC_Os06g04310
Target Sequence 
GCTGCTACTGAGTCCCATTACAAAAGGCGTGGTGCTTTATCTATCCCCAAGGAGGATTTTGAGGTGACTTTATCCATTGA
TGACTACGTCAGCCAGTACAATAAGATGATTTCAGGAGAGCTCGGAACAGAACCAGGTGGAGGTAGAGGTCAAAGCCGAA
TGCATGTGGCACTAAGAGTGCTACAAGAAATTGGTATTGCTGCAGAAGATCCTGGCCTTGAGGGCATGCGCTATAAAATC
TATAACTGGAAGATGATTAACAAGGAGGATGTTAAATTCAAGGAAATTGCCGAAGAGATCGGGATAAAAGCTAGGGTCAT
GGCTGCAGGATTCAAGATATCTAGCAACTTCAGGACCACCAAGCCAGGCGAGATTTACTCCTACGAGCCTAACAAGAGGG
AGAAAAACGAGGATGGAGTCACACGTTCCCATTGTGTCCTGGTGGTCGGATTTGGGCGACGAGAGGGGCAAGAGTACCTG
GTGTATCAGAATAGTGCTGGCATAGAGTTTGGAGAGGAGGGCTTTGGCCGTGTCTATCTCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis