Browse Element(s) Details

OsAffx.15280.1.S1_at

Description

tigr:9634.m00524
TID=OsAffx.15280.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06014	11/11	expressed protein
LOC_Os05g08090	3/11	expressed protein
LOC_Os06g50310	1/11	bZIP transcription factor family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05980	Os.27301.1.S1_at	11/11	6	+	2742657..2748184	Solute carrier family 35 member C2, putative, expressed
LOC_Os06g05990	OsAffx.10929.1.S1_x_at	1/11	6	+	2748784..2753800	expressed protein
LOC_Os06g06000	OsAffx.4737.1.S1_at	11/11	6	+	2758259..2761128	hypothetical protein
LOC_Os06g06014	Os.10264.1.S1_at	11/11	6	+	2765148..2769430	expressed protein
LOC_Os06g06014	OsAffx.15280.1.S1_at	11/11	6	+	2765148..2769430	expressed protein
LOC_Os06g06014	Os.10264.2.S1_at	10/11	6	+	2765148..2769430	expressed protein
LOC_Os06g06030	Os.10995.1.S1_at	11/11	6	+	2770074..2773038	Proteasome subunit beta type 5 precursor, putative, expressed
LOC_Os06g06040	Os.46439.1.S1_at	11/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06040	Os.21058.1.S1_s_at	11/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06040	OsAffx.15281.1.S1_at	9/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06050	Os.18946.2.S1_at	11/11	6	+	2779789..2784227	F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06050	Os.18946.1.S1_at	11/11	6	+	2779789..2784227	F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06060	NA	NA	6	+	2785775..2789141	retrotransposon protein, putative, unclassified
LOC_Os06g06070	NA	NA	6	+	2790043..2792657	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15280.1.S1_at--1041--149	3	Chr12:13770993..13771012 (20 bp)	AGCACTAAGGCGGTTGCGGAGGTCA	NONE
OsAffx.15280.1.S1_at--367--667	3	Chr12:13771000..13771024 (25 bp)	GTTGCGGAGGTCAAGGCGTCCACTC	NONE
OsAffx.15280.1.S1_at--84--295	4	Chr12:13771012..13771031 (20 bp)	AAGGCGTCCACTCCGCCTTATGTTT	NONE
OsAffx.15280.1.S1_at--507--415	2	Chr05:4382006..4382030 (25 bp)	CGCCTTATGTTTCCTCCGCCTTAGA	LOC_Os05g08090
OsAffx.15280.1.S1_at--786--877	2	Chr05:4382013..4382037 (25 bp)	TGTTTCCTCCGCCTTAGAGGCAAAA	LOC_Os05g08090
OsAffx.15280.1.S1_at--301--1067	3	Chr12:13771022..13771043 (22 bp)	TTCCTCCGCCTTAGAGGCAAAACGA	NONE
OsAffx.15280.1.S1_at--202--445	1	Chr06:2766652..2766676 (25 bp)	GCCTTAGAGGCAAAACGAGTACAGA	LOC_Os06g06014
OsAffx.15280.1.S1_at--1035--617	1	Chr06:2766646..2766670 (25 bp)	GAGGCAAAACGAGTACAGAAAGGGA	LOC_Os06g06014
OsAffx.15280.1.S1_at--594--815	1	Chr06:2766624..2766648 (25 bp)	GGAAAGAACATGAAAAACCAGTAGA	LOC_Os06g06014
OsAffx.15280.1.S1_at--416--611	1	Chr06:2765834..2765858 (25 bp)	GAGTGAAAACAGTTGACGATGTCAA	LOC_Os06g06014
OsAffx.15280.1.S1_at--568--1075	1	Chr06:2765822..2765846 (25 bp)	TTGACGATGTCAAGACATTTCTGAC	LOC_Os06g06014

Target Sequence

AGCACTAAGGCGGTTGCGGAGGTCAAGGCGTCCACTCCGCCTTATGTTTCCTCCGCCTTAGAGGCAAAACGAGTACAGAA
AGGGAAAGAACATGAAAAACCAGTAGAGAAAGGGAAGGAAGAAGAGAACAAAAGTGGAGTGAAAACAGTTGACGATGTCA
AGACATTTCTGAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis