Browse Element(s) Details


OsAffx.15421.1.S1_at

Description tigr:9634.m01416
TID=OsAffx.15421.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1418011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14150Os.31312.2.S1_x_at4/116+7891439..7894857retrotransposon protein, putative, unclassified
LOC_Os06g14150Os.31312.5.S1_x_at4/116+7891439..7894857retrotransposon protein, putative, unclassified
LOC_Os06g14160NANA6+7895480..7900970retrotransposon protein, putative, unclassified
LOC_Os06g14170OsAffx.4836.1.S1_at11/116+7905229..7906515hypothetical protein
LOC_Os06g14170OsAffx.10596.1.S1_at1/116+7905229..7906515hypothetical protein
LOC_Os06g14180OsAffx.15421.1.S1_at11/116+7914592..7915553expressed protein
LOC_Os06g14190Os.17665.1.S1_x_at11/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14190Os.17665.2.S1_at8/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14200OsAffx.27630.1.S1_at11/116+7924698..7926407Zinc finger, C3HC4 type family protein
LOC_Os06g14210NANA6+7928550..7929332expressed protein
LOC_Os06g14220Os.53026.1.S1_at10/116+7932985..7934242sulfotransferase family protein, putative, expressed
LOC_Os06g14230NANA6+7936672..7936926hypothetical protein
LOC_Os06g14240Os.9950.1.S1_at11/116+7939955..7940681Hsp20/alpha crystallin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15421.1.S1_at--383--9371Chr06:7914827..7914851 (25 bp)
TCGACGCGTACGAGGTGGACTGCAT
LOC_Os06g14180
OsAffx.15421.1.S1_at--298--5811Chr06:7914829..7914853 (25 bp)
GACGCGTACGAGGTGGACTGCATCC
LOC_Os06g14180
OsAffx.15421.1.S1_at--714--1831Chr06:7914830..7914854 (25 bp)
ACGCGTACGAGGTGGACTGCATCCG
LOC_Os06g14180
OsAffx.15421.1.S1_at--474--4031Chr06:7914833..7914857 (25 bp)
CGTACGAGGTGGACTGCATCCGCCG
LOC_Os06g14180
OsAffx.15421.1.S1_at--983--1051Chr06:7914839..7914863 (25 bp)
AGGTGGACTGCATCCGCCGGGAGCT
LOC_Os06g14180
OsAffx.15421.1.S1_at--452--1091Chr06:7914866..7914890 (25 bp)
AGGGCCTCATCCTCAGGCACAACGC
LOC_Os06g14180
OsAffx.15421.1.S1_at--616--7231Chr06:7914927..7914951 (25 bp)
GTCCGACGACGCGAAGAGCGAACAC
LOC_Os06g14180
OsAffx.15421.1.S1_at--484--4231Chr06:7914929..7914953 (25 bp)
CCGACGACGCGAAGAGCGAACACCG
LOC_Os06g14180
OsAffx.15421.1.S1_at--1082--1712Chr06:7914971..7914995 (25 bp)
ACCACCATAAGACGACGAGCGCCGC
LOC_Os06g14180
OsAffx.15421.1.S1_at--1136--7291Chr06:7915152..7915176 (25 bp)
GTGCGACGACGCGAAGAGCGAACAC
LOC_Os06g14180
OsAffx.15421.1.S1_at--433--4611Chr06:7915154..7915178 (25 bp)
GCGACGACGCGAAGAGCGAACACCG
LOC_Os06g14180
Target Sequence 
TCGACGCGTACGAGGTGGACTGCATCCGCCGGGAGCTCGAGGGCCTCATCCTCAGGCACAACGCGGCGGCGGCGGCCAAG
AAAGAGGCCGCTGAGGCCGAGTCCGACGACGCGAAGAGCGAACACCGCCGCCGCCACCACCACCACCACCATAAGACGAC
GAGCGCCGCCAAGAACGCGAACCCCGCGGCGGCGCCGCCGCGGAGCCCGGCCAAGAAGGCGCCATCAGGAGGCGCCGGGG
TGCGGATGCTGGGGAGACACGCCGTCGCGGTGTGCGGCGTGTCCGTGCCCGTGCCCGTGTCCATCGCCGCCGCCGCCGGC
GGCGAGTGCGACGACGCGAAGAGCGAACACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis