Browse Element(s) Details

OsAffx.15464.1.S1_at

Description

tigr:9634.m01707
TID=OsAffx.15464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16950	9/11	hypothetical protein
LOC_Os04g06059	3/11

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16900	Os.47463.1.S1_x_at	6/11	6	+	9796426..9800779	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16900	Os.14491.2.S1_x_at	5/11	6	+	9796426..9800779	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16909	NA	NA	6	+	9802891..9803400	NA
LOC_Os06g16920	NA	NA	6	+	9807459..9807935	expressed protein
LOC_Os06g16930	Os.2987.3.S1_x_at	2/11	6	+	9812601..9813413	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16940	NA	NA	6	+	9815571..9817613	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16950	OsAffx.15464.1.S1_x_at	10/11	6	+	9821442..9823910	hypothetical protein
LOC_Os06g16950	OsAffx.15464.1.S1_at	9/11	6	+	9821442..9823910	hypothetical protein
LOC_Os06g16950	OsAffx.2606.1.S1_at	2/11	6	+	9821442..9823910	hypothetical protein
LOC_Os06g16950	OsAffx.32163.2.S1_at	2/11	6	+	9821442..9823910	hypothetical protein
LOC_Os06g16950	OsAffx.8939.1.S1_x_at	1/11	6	+	9821442..9823910	hypothetical protein
LOC_Os06g16960	OsAffx.27680.1.S1_at	10/11	6	+	9831188..9833592	O-methyltransferase family protein
LOC_Os06g16970	OsAffx.4855.1.S1_at	11/11	6	+	9836651..9837052	hypothetical protein
LOC_Os06g16980	Os.20056.1.A1_at	11/11	6	+	9839889..9855981	DNA topoisomerase I family protein, expressed
LOC_Os06g16980	OsAffx.24454.2.S1_x_at	2/11	6	+	9839889..9855981	DNA topoisomerase I family protein, expressed
LOC_Os06g16980	Os.7779.1.S2_x_at	2/11	6	+	9839889..9855981	DNA topoisomerase I family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15464.1.S1_at--16--171	7	Chr08:11331978..11332270 (25 bp)	ACCAATCAAAGCAGAGTAGGCATAG	NONE
OsAffx.15464.1.S1_at--24--971	7	Chr08:11332255..11332275 (21 bp)	TCAAAGCAGAGTAGGCATAGCCGAA	NONE
OsAffx.15464.1.S1_at--559--1009	5	Chr08:6709004..6709027 (24 bp)	TAGGCATAGCCGAAGAGGCATGGTT	NONE
OsAffx.15464.1.S1_at--808--355	5	Chr08:6709004..6709023 (20 bp)	CATAGCCGAAGAGGCATGGTTTGAT	NONE
OsAffx.15464.1.S1_at--506--647	1	NONE	GATAACGATGAGTATGTCTTGCATT	NONE
OsAffx.15464.1.S1_at--494--323	1	Chr06:9821544..9821568 (25 bp)	CAAGATACTTCGACGGTGCAAAGAT	LOC_Os06g16950
OsAffx.15464.1.S1_at--360--647	1	Chr06:9821541..9821565 (25 bp)	GATACTTCGACGGTGCAAAGATGCA	LOC_Os06g16950
OsAffx.15464.1.S1_at--591--205	1	Chr06:9821538..9821562 (25 bp)	ACTTCGACGGTGCAAAGATGCAATA	LOC_Os06g16950
OsAffx.15464.1.S1_at--538--329	1	Chr06:9821526..9821550 (25 bp)	CAAAGATGCAATACCTACTAGAGAT	LOC_Os06g16950
OsAffx.15464.1.S1_at--468--357	1	Chr06:9821475..9821499 (25 bp)	CATAGTGGTTGGATCAGGCTCGCAG	LOC_Os06g16950
OsAffx.15464.1.S1_at--720--27	1	Chr06:9821474..9821498 (25 bp)	ATAGTGGTTGGATCAGGCTCGCAGA	LOC_Os06g16950

Target Sequence

ACCAATCAAAGCAGAGTAGGCATAGCCGAAGAGGCATGGTTTGATGAAGATGACGGTGTCGTTGATCCAGTCAATAGCAG
TGTAGTAGTCAATGATAACGATGAGTATGTCTTGCATTGTTTTGGTGATGACGATTGTGTCAAGATACTTCGACGGTGCA
AAGATGCAATACCTACTAGAGATGCTGGAGGAAAGGTGATAATCATAAACATAGTGGTTGGATCAGGCTCGCAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis