Browse Element(s) Details


OsAffx.15506.1.S1_at

Description tigr:9634.m01936
TID=OsAffx.15506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to aconitate hydratase, cytoplasmic (ec 4.2.1.3) (citrate hydro-lyase) (aconitase) (fragment). (potato
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1996011/11Aconitase family containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19930Os.17297.1.S1_at1/116+11411055..11415473retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.15504.1.S1_at10/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.20733.1.A1_x_at4/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940Os.45173.1.S1_x_at3/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.20691.1.A1_x_at2/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19950NANA6+11422611..11423936Transposable element protein, putative, MuDR
LOC_Os06g19960OsAffx.15506.1.S1_at11/116+11438153..11446644Aconitase family containing protein
LOC_Os06g19960Os.20476.2.S1_a_at1/116+11438153..11446644Aconitase family containing protein
LOC_Os06g19970OsAffx.15507.2.S1_at11/116+11449220..11449805expressed protein
LOC_Os06g19970OsAffx.15507.2.S1_x_at11/116+11449220..11449805expressed protein
LOC_Os06g19980OsAffx.15508.1.S1_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980Os.18071.1.S1_s_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980Os.18071.1.S1_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19990Os.12376.1.S1_at11/116+11460524..11463788expressed protein
LOC_Os06g19990Os.3053.1.A1_at1/116+11460524..11463788expressed protein
LOC_Os06g20000OsAffx.15509.1.S1_at11/116+11468461..11468730hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003994molecular_functionaconitate hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15506.1.S1_at--404--8971Chr06:11445705..11445729 (25 bp)
TGAAATCCAGTGTGCTACCTCACAT
LOC_Os06g19960
OsAffx.15506.1.S1_at--429--9971Chr06:11445720..11445744 (25 bp)
TACCTCACATGTTCACGCAAACGTA
LOC_Os06g19960
OsAffx.15506.1.S1_at--735--5131Chr06:11445736..11445760 (25 bp)
GCAAACGTACGAATCCATCAAGAGA
LOC_Os06g19960
OsAffx.15506.1.S1_at--431--1351Chr06:11445785..11445809 (25 bp)
AGAGTTCCAGGCGAGGCAGCTGCCC
LOC_Os06g19960
OsAffx.15506.1.S1_at--554--771Chr06:11445817..11445841 (25 bp)
ATGGGACCCGAGCTCGACCTACATC
LOC_Os06g19960
OsAffx.15506.1.S1_at--58--2671Chr06:11445845..11445869 (25 bp)
AAGCCGCCCTACTTGGAGGGCATGG
LOC_Os06g19960
OsAffx.15506.1.S1_at--387--8891Chr06:11445900..11445924 (25 bp)
TGAGGGATGCCTACTGCCTGCTCAA
LOC_Os06g19960
OsAffx.15506.1.S1_at--931--5291Chr06:11446126..11446150 (25 bp)
GAAGGTTGGACCCAAGACTGTTCAT
LOC_Os06g19960
OsAffx.15506.1.S1_at--899--3211Chr06:11446138..11446162 (25 bp)
CAAGACTGTTCATGTTCCCACCGGG
LOC_Os06g19960
OsAffx.15506.1.S1_at--601--5471Chr06:11446166..11446190 (25 bp)
GAACTCTGTGTCTTTGATGCAGCCA
LOC_Os06g19960
OsAffx.15506.1.S1_at--748--331Chr06:11446505..11446529 (25 bp)
ATACAAATCCGAGGGTCACAATATG
LOC_Os06g19960
Target Sequence 
TGAAATCCAGTGTGCTACCTCACATGTTCACGCAAACGTACGAATCCATCAAGAGATGCAACCGGAGGTGGAACGAGCTG
AGAGTTCCAGGCGAGGCAGCTGCCCTCTACCCATGGGACCCGAGCTCGACCTACATCCGCAAGCCGCCCTACTTGGAGGG
CATGGCCATGTCCCCGCCCAGCCGCCCACGCTCGGTGAGGGATGCCTACTGCCTGCTCAACCTGGGGGACTCCGTCACCA
CGGACCACATCTCCTACTCCGGGAGCATCACGCCCGGCAGCGCCGCCGCTGAGTACCTACGCGCCGCCGGCGTCGCGGAT
CGGGAGAGGCTCGGCTCCTACGGTGGCCGGCGTGGCAACGATGAGGTGGTGGTGAGGGGCGCGTTTGCAAACGCGAGGAT
TGTGAACAAGCTTATGAATGGGAAGGTTGGACCCAAGACTGTTCATGTTCCCACCGGGGAGGAACTCTGTGTCTTTGATG
CAGCCATAAAATACAAATCCGAGGGTCACAATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis