Browse Element(s) Details


OsAffx.15571.1.S1_at

Description tigr:9634.m02271
TID=OsAffx.15571.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2309010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23030OsAffx.4911.1.S1_x_at11/116+13438252..13438923ZF-HD protein dimerisation region containing protein
LOC_Os06g23030OsAffx.4911.1.S1_at11/116+13438252..13438923ZF-HD protein dimerisation region containing protein
LOC_Os06g23040OsAffx.15568.1.S1_at11/116+13439853..13441507expressed protein
LOC_Os06g23040Os.49364.1.A1_x_at1/116+13439853..13441507expressed protein
LOC_Os06g23050OsAffx.15569.1.S1_at11/116+13443122..13443592AP2 domain containing protein
LOC_Os06g23060OsAffx.15570.1.S1_at11/116+13446100..13446756hypothetical protein
LOC_Os06g23070OsAffx.22368.1.S1_x_at1/116+13447494..13452398retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23080OsAffx.20628.1.S1_at3/116+13453972..13456878retrotransposon protein, putative, unclassified
LOC_Os06g23090OsAffx.15571.1.S1_at10/116+13463026..13468259hypothetical protein
LOC_Os06g23090Os.50619.1.S1_at1/116+13463026..13468259hypothetical protein
LOC_Os06g23100NANA6+13471783..13472250hypothetical protein
LOC_Os06g23114Os.52128.1.S1_at11/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23114Os.52460.1.S1_at11/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23114OsAffx.16614.1.S1_x_at1/116+13475515..13484052Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os06g23130OsAffx.15573.1.S1_at5/116+13487228..13489948hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15571.1.S1_at--465--6591NONE
GATTGTCAGTTGCTTGGGATTCCTA
NONE
OsAffx.15571.1.S1_at--297--1491Chr06:13467790..13467814 (25 bp)
AGCAAATTGCGCGACCATTTCGTGC
LOC_Os06g23090
OsAffx.15571.1.S1_at--1151--5131Chr06:13467851..13467875 (25 bp)
GCAAACTCGTGCACTTGTTCTTGAT
LOC_Os06g23090
OsAffx.15571.1.S1_at--878--10351Chr06:13467877..13467901 (25 bp)
TTTTTGGCTCCATAGTTTTCACTGA
LOC_Os06g23090
OsAffx.15571.1.S1_at--1105--1191Chr06:13467890..13467914 (25 bp)
AGTTTTCACTGATACACCTGGAGAT
LOC_Os06g23090
OsAffx.15571.1.S1_at--662--5111Chr06:13467988..13468012 (25 bp)
GCACTTTCCACGTTGTACAGGCAAA
LOC_Os06g23090
OsAffx.15571.1.S1_at--542--6411Chr06:13468038..13468062 (25 bp)
GATCTGAAACATGTGGGCCTTACTA
LOC_Os06g23090
OsAffx.15571.1.S1_at--553--8791Chr06:13468072..13468096 (25 bp)
TGTTGGTCGCGTTTGTCACTAGGGC
LOC_Os06g23090
OsAffx.15571.1.S1_at--716--5731Chr06:13468158..13468182 (25 bp)
GACTGTTGCCCTGTATTTGGAGCTA
LOC_Os06g23090
OsAffx.15571.1.S1_at--558--7311Chr06:13468189..13468213 (25 bp)
GTGCTGCACATGAATTTCGTACCCC
LOC_Os06g23090
OsAffx.15571.1.S1_at--1010--10611Chr06:13468204..13468228 (25 bp)
TTCGTACCCCACGTAATGCTGGTAT
LOC_Os06g23090
Target Sequence 
GATTGTCAGTTGCTTGGGATTCCTATAGAAGAACTACACATGAAGCAGAAAACGAGGAAAATGGAGGATCATACAAGTAC
TACGAGTTATTCACAGTACTGTCAGTTTAAGCAAATTGCGCGACCATTTCGTGCAATGCCAAACAACCCAACACAACTGG
AAATAAATTGGCAAACTCGTGCACTTGTTCTTGATATTTTTGGCTCCATAGTTTTCACTGATACACCTGGAGATGGACTG
CCAGCAATGTACCTCCAATTTATGGTAGATTTAACTGCACCAACAGAGTACAACTGGGGGAGCAGCTGCACTTTCCACGT
TGTACAGGCAAATAGAGTATTGGTTCTGAGAAGGAGAGATCTGAAACATGTGGGCCTTACTACAGTTGTGGTGTTGGTCG
CGTTTGTCACTAGGGCGTCCTGTAAATGTAATGCAAAATACACAAGAAACCGAGGGAGTGCAAGAGACTCGCAGATGGAC
TGTTGCCCTGTATTTGGAGCTAAGTGGGGTGCTGCACATGAATTTCGTACCCCACGTAATGCTGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis