Browse Element(s) Details

OsAffx.15703.1.S1_at

Description

tigr:9634.m03045
TID=OsAffx.15703.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g32540	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g32500	OsAffx.15701.1.S1_x_at	10/11	6	+	18901859..18906748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32500	OsAffx.514.1.S1_at	1/11	6	+	18901859..18906748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32510	OsAffx.15702.1.S1_at	11/11	6	+	18908090..18909462	hypothetical protein
LOC_Os06g32520	OsAffx.28610.3.S1_at	1/11	6	+	18915542..18915904	hypothetical protein
LOC_Os06g32520	OsAffx.28610.1.S1_x_at	1/11	6	+	18915542..18915904	hypothetical protein
LOC_Os06g32530	OsAffx.20725.4.S1_x_at	1/11	6	+	18923140..18926352	transposon protein, putative, unclassified
LOC_Os06g32530	OsAffx.20725.3.S1_x_at	1/11	6	+	18923140..18926352	transposon protein, putative, unclassified
LOC_Os06g32530	OsAffx.20725.1.S1_x_at	1/11	6	+	18923140..18926352	transposon protein, putative, unclassified
LOC_Os06g32540	OsAffx.15703.1.S1_x_at	11/11	6	+	18927460..18927889	hypothetical protein
LOC_Os06g32540	OsAffx.15703.1.S1_at	11/11	6	+	18927460..18927889	hypothetical protein
LOC_Os06g32540	OsAffx.18934.1.S1_x_at	2/11	6	+	18927460..18927889	hypothetical protein
LOC_Os06g32550	Os.23224.1.S1_s_at	4/11	6	+	18929753..18930413	Plant thionin family protein
LOC_Os06g32560	Os.23706.1.A1_x_at	1/11	6	+	18936419..18939147	retrotransposon protein, putative, unclassified
LOC_Os06g32570	NA	NA	6	+	18940161..18940789	retrotransposon protein, putative, unclassified
LOC_Os06g32580	NA	NA	6	+	18950377..18951739	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32590	OsAffx.27899.1.S1_at	11/11	6	+	18952590..18953116	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15703.1.S1_at--388--277	1	Chr06:18927593..18927617 (25 bp)	AAGACCCCAACAACATAAGTGTTCT	LOC_Os06g32540
OsAffx.15703.1.S1_at--753--71	1	Chr06:18927592..18927616 (25 bp)	AGACCCCAACAACATAAGTGTTCTG	LOC_Os06g32540
OsAffx.15703.1.S1_at--40--247	1	Chr06:18927585..18927609 (25 bp)	AACAACATAAGTGTTCTGCACCCAG	LOC_Os06g32540
OsAffx.15703.1.S1_at--1057--219	1	Chr06:18927584..18927608 (25 bp)	ACAACATAAGTGTTCTGCACCCAGC	LOC_Os06g32540
OsAffx.15703.1.S1_at--427--327	1	Chr06:18927583..18927607 (25 bp)	CAACATAAGTGTTCTGCACCCAGCT	LOC_Os06g32540
OsAffx.15703.1.S1_at--531--251	1	Chr06:18927582..18927606 (25 bp)	AACATAAGTGTTCTGCACCCAGCTT	LOC_Os06g32540
OsAffx.15703.1.S1_at--575--409	1	Chr06:18927550..18927574 (25 bp)	CGACGGTGACATTGATATTATCCAG	LOC_Os06g32540
OsAffx.15703.1.S1_at--584--575	1	Chr06:18927549..18927573 (25 bp)	GACGGTGACATTGATATTATCCAGG	LOC_Os06g32540
OsAffx.15703.1.S1_at--252--397	1	Chr06:18927547..18927571 (25 bp)	CGGTGACATTGATATTATCCAGGAG	LOC_Os06g32540
OsAffx.15703.1.S1_at--377--737	1	Chr06:18927545..18927569 (25 bp)	GTGACATTGATATTATCCAGGAGGA	LOC_Os06g32540
OsAffx.15703.1.S1_at--70--361	1	Chr06:18927541..18927565 (25 bp)	CATTGATATTATCCAGGAGGACATT	LOC_Os06g32540

Target Sequence

AAGACCCCAACAACATAAGTGTTCTGCACCCAGCTTTCATCGACGACGGTGACATTGATATTATCCAGGAGGACATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis