Browse Element(s) Details


OsAffx.15707.1.S1_at

Description tigr:9634.m03089
TID=OsAffx.15707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3297011/11Harpin-induced protein 1 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32930Os.23748.1.A1_at4/116+19180368..19181688hypothetical protein
LOC_Os06g32944Os.41074.1.S1_at11/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.9060.1.S1_at8/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.23696.1.S1_x_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.20956.1.S1_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32960OsAffx.27910.2.S1_x_at11/116+19193461..19194512Peroxidase family protein
LOC_Os06g32970OsAffx.15707.1.S1_at11/116+19194777..19195493Harpin-induced protein 1 containing protein
LOC_Os06g32970OsAffx.15707.1.S1_x_at11/116+19194777..19195493Harpin-induced protein 1 containing protein
LOC_Os06g32980OsAffx.27910.1.S1_at11/116+19198632..19199718Peroxidase family protein
LOC_Os06g32990Os.5905.1.S1_at11/116+19204574..19206122Peroxidase family protein, expressed
LOC_Os06g33000Os.46306.1.S1_x_at2/116+19207856..19210951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33010NANA6+19214534..19216507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33020NANA6+19216753..19221273retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15707.1.S1_at--537--3791Chr06:19195307..19195331 (25 bp)
CTCGTCGTGACAATCGCCACGCTGG
LOC_Os06g32970
OsAffx.15707.1.S1_at--730--4011Chr06:19195305..19195329 (25 bp)
CGTCGTGACAATCGCCACGCTGGCG
LOC_Os06g32970
OsAffx.15707.1.S1_at--759--6311Chr06:19194981..19195005 (25 bp)
GATGACGGTGCTGTCGAGCAGCTTC
LOC_Os06g32970
OsAffx.15707.1.S1_at--116--691Chr06:19194980..19195004 (25 bp)
ATGACGGTGCTGTCGAGCAGCTTCA
LOC_Os06g32970
OsAffx.15707.1.S1_at--814--5751Chr06:19194978..19195002 (25 bp)
GACGGTGCTGTCGAGCAGCTTCACC
LOC_Os06g32970
OsAffx.15707.1.S1_at--767--3971Chr06:19194976..19195000 (25 bp)
CGGTGCTGTCGAGCAGCTTCACCGG
LOC_Os06g32970
OsAffx.15707.1.S1_at--320--4071Chr06:19194967..19194991 (25 bp)
CGAGCAGCTTCACCGGGGACGTCAT
LOC_Os06g32970
OsAffx.15707.1.S1_at--886--4651Chr06:19194842..19194866 (25 bp)
GCGGTGGCGTACTCCGACTGCCATG
LOC_Os06g32970
OsAffx.15707.1.S1_at--682--8471Chr06:19194838..19194862 (25 bp)
TGGCGTACTCCGACTGCCATGTCGT
LOC_Os06g32970
OsAffx.15707.1.S1_at--455--9911Chr06:19194833..19194857 (25 bp)
TACTCCGACTGCCATGTCGTCTTCG
LOC_Os06g32970
OsAffx.15707.1.S1_at--28--4111Chr06:19194828..19194852 (25 bp)
CGACTGCCATGTCGTCTTCGGCGTC
LOC_Os06g32970
Target Sequence 
CTCGTCGTGACAATCGCCACGCTGGCGCTCCTCGGCGTCGCCGTCCTCGTCCTCTCCCTCACCGTGTTCCGCGTCCGCGA
CCCGGCCACCCGCCTCGTGTCGGTCCGCGTCGTCGGCGTCTCGCCGAACCTGGCGCCCCCGTCGCCCCAGATCAACGTGA
CGCTGCTGCTCACGGTGGCCGTGCACAACCCCAACCCGGCGTCCTTCACCTACTCGTCCGACTCCGGCGGCCACGCCGAC
CTCACGTACCGCGGCGCCCACGTCGGCGACGCCGTCGTCGAGGCCGGCCGCATCCCCAGCAGAGGGGACGGCGCCGTGCA
GATGGAGATGACGGTGCTGTCGAGCAGCTTCACCGGGGACGTCATGGCGGAGCTGATCAGGGACATCGAGGCCGGCGCCG
TGCCGTTCGACGCGAGCGCGAGGATCCCCGGGAAGGTGGCCGTGTTCGGGGTGCTGAAGCTGCACGCGGTGGCGTACTCC
GACTGCCATGTCGTCTTCGGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis