Browse Element(s) Details


Os.5905.1.S1_at

Description gb:AK072761.1
DB_XREF= gi:32982784
TID=Os.5905.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143E11, full insert sequence.
FL= gb:AK072761.1 gb:AK061144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3299011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32930Os.23748.1.A1_at4/116+19180368..19181688hypothetical protein
LOC_Os06g32944Os.41074.1.S1_at11/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.9060.1.S1_at8/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.23696.1.S1_x_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.20956.1.S1_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32960OsAffx.27910.2.S1_x_at11/116+19193461..19194512Peroxidase family protein
LOC_Os06g32970OsAffx.15707.1.S1_at11/116+19194777..19195493Harpin-induced protein 1 containing protein
LOC_Os06g32970OsAffx.15707.1.S1_x_at11/116+19194777..19195493Harpin-induced protein 1 containing protein
LOC_Os06g32980OsAffx.27910.1.S1_at11/116+19198632..19199718Peroxidase family protein
LOC_Os06g32990Os.5905.1.S1_at11/116+19204574..19206122Peroxidase family protein, expressed
LOC_Os06g33000Os.46306.1.S1_x_at2/116+19207856..19210951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33010NANA6+19214534..19216507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33020NANA6+19216753..19221273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33030Os.45976.1.S1_x_at2/116+19225412..19229085transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33040NANA6+19230469..19233393transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5905.1.S1_at--622--1631Chr06:19205022..19205046 (25 bp)
AGCGGACGCCGATGAAGTTCGACAT
LOC_Os06g32990
Os.5905.1.S1_at--1030--1211Chr06:19205007..19205031 (25 bp)
AGTTCGACATGCTCTACTACCAGGA
LOC_Os06g32990
Os.5905.1.S1_at--508--9971Chr06:19204990..19205014 (25 bp)
TACCAGGACCTGCTCTTCAAGCGGG
LOC_Os06g32990
Os.5905.1.S1_at--313--371Chr06:19204801..19204825 (25 bp)
ATCAAGTGCTCCGTGGCCAATGGTC
LOC_Os06g32990
Os.5905.1.S1_at--868--8591Chr06:19204781..19204805 (25 bp)
TGGTCATTATTGATGGCCGGCCGTC
LOC_Os06g32990
Os.5905.1.S1_at--963--4491Chr06:19204762..19204786 (25 bp)
GCCGTCATATCTCCTTTTGTTTAAG
LOC_Os06g32990
Os.5905.1.S1_at--714--8771Chr06:19204745..19204769 (25 bp)
TGTTTAAGCTTTGAGTCCACCCAAC
LOC_Os06g32990
Os.5905.1.S1_at--983--3251Chr06:19204724..19204748 (25 bp)
CAACTCTTTTTGGACTCATCTGTAT
LOC_Os06g32990
Os.5905.1.S1_at--575--5711Chr06:19204712..19204736 (25 bp)
GACTCATCTGTATTTGTCTAAATCA
LOC_Os06g32990
Os.5905.1.S1_at--87--10271Chr06:19204648..19204672 (25 bp)
TTTGTTTCTTCTAACGATGCATTCG
LOC_Os06g32990
Os.5905.1.S1_at--203--791Chr06:19204577..19204601 (25 bp)
ATGTGTATTGGCACGTTTTGAATGA
LOC_Os06g32990
Target Sequence 
AGCGGACGCCGATGAAGTTCGACATGCTCTACTACCAGGACCTGCTCTTCAAGCGGGGGCTCCTCGCCACCGACCAGGCG
CTCTACACCCCGGGCAGCTGGGCCGGCGAGCTTGTGCTGACCTACTCCCGCAACCAGGAGGCGTTCTTCGCCGACTTCGC
GAGGGCGATGGTGAAGATGGGGAACATACGCCCGGACCCTTGGACTCCGACGGAGGTCAGGATCAAGTGCTCCGTGGCCA
ATGGTCATTATTGATGGCCGGCCGTCATATCTCCTTTTGTTTAAGCTTTGAGTCCACCCAACTCTTTTTGGACTCATCTG
TATTTGTCTAAATCAAAATTTTACGTTTACTGTATTCGTTTGTATATGTCAATTTTTGTTTCTTCTAACGATGCATTCGT
ATATGAATTCGTATATGTGCAATATGATGTGATGCGAAANTAAAAATGTGTATTGGCACGTTTTGAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis