Browse Element(s) Details


OsAffx.27910.2.S1_x_at

Description tigr:9634.m03088
TID=OsAffx.27910.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bacterial-induced peroxidase precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3296011/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32930Os.23748.1.A1_at4/116+19180368..19181688hypothetical protein
LOC_Os06g32944Os.41074.1.S1_at11/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.9060.1.S1_at8/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.23696.1.S1_x_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.20956.1.S1_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32960OsAffx.27910.2.S1_x_at11/116+19193461..19194512Peroxidase family protein
LOC_Os06g32970OsAffx.15707.1.S1_at11/116+19194777..19195493Harpin-induced protein 1 containing protein
LOC_Os06g32970OsAffx.15707.1.S1_x_at11/116+19194777..19195493Harpin-induced protein 1 containing protein
LOC_Os06g32980OsAffx.27910.1.S1_at11/116+19198632..19199718Peroxidase family protein
LOC_Os06g32990Os.5905.1.S1_at11/116+19204574..19206122Peroxidase family protein, expressed
LOC_Os06g33000Os.46306.1.S1_x_at2/116+19207856..19210951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33010NANA6+19214534..19216507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33020NANA6+19216753..19221273retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27910.2.S1_x_at--599--8531Chr06:19193986..19194010 (25 bp)
TGGACTCGCGCCGAGCCAGCAAAGA
LOC_Os06g32960
OsAffx.27910.2.S1_x_at--992--5851Chr06:19193998..19194022 (25 bp)
GAGCCAGCAAAGACGACGCCGAGAG
LOC_Os06g32960
OsAffx.27910.2.S1_x_at--187--4051Chr06:19194017..19194041 (25 bp)
CGAGAGCGTCGACAACCTCCCGAAC
LOC_Os06g32960
OsAffx.27910.2.S1_x_at--937--9531Chr06:19194172..19194196 (25 bp)
TCTACGGCGCCAACAACGACAACAT
LOC_Os06g32960
OsAffx.27910.2.S1_x_at--189--2071Chr06:19194295..19194319 (25 bp)
ACTTCCAGGACTTGCTCCAGCGGCG
LOC_Os06g32960
OsAffx.27910.2.S1_x_at--961--10671Chr06:19194297..19194321 (25 bp)
TTCCAGGACTTGCTCCAGCGGCGCG
LOC_Os06g32960
OsAffx.27910.2.S1_x_at--1041--9791Chr06:19194367..19194391 (25 bp)
TAAGCGACCTGGTGGAGATGTACGC
LOC_Os06g32960
OsAffx.27910.2.S1_x_at--612--1771Chr06:19194373..19194397 (25 bp)
ACCTGGTGGAGATGTACGCGACGAA
LOC_Os06g32960
OsAffx.27910.2.S1_x_at--84--3911Chr06:19194375..19194399 (25 bp)
CTGGTGGAGATGTACGCGACGAACC
LOC_Os06g32960
OsAffx.27910.2.S1_x_at--251--4611Chr06:19194390..19194414 (25 bp)
GCGACGAACCGCGAGGCGTTCTTCG
LOC_Os06g32960
OsAffx.27910.2.S1_x_at--435--8171Chr06:19194445..19194469 (25 bp)
GGAACATACGCCCGCCGCAGTGGAT
LOC_Os06g32960
Target Sequence 
TGGACTCGCGCCGAGCCAGCAAAGACGACGCCGAGAGCGTCGACAACCTCCCGAACCCGAACAGCGATCTCGGCGAGCTC
CTCAGGGTGTTCGAGACGCACGGCCTCGACGCCCGCGACCTCACCGCGCTCTCCGGCGCGCACACCGTCGGCAAGGCCCA
CAGCTGCGACAACTACAGGGACCGCATCTACGGCGCCAACAACGACAACATCGACCCCTCCTTCGCCGCGCTCCGCCGGC
GGTCGTGCGAGCAGGGCGGCGGCGAGGCGCCGTTCGACGAGCAGACGCCGATGCGGTTCGACAACAAGTACTTCCAGGAC
TTGCTCCAGCGGCGCGGCCTCCTCACCTCCGACCAGGAGCTCTACACCCATGGCGGGGAGGTAAGCGACCTGGTGGAGAT
GTACGCGACGAACCGCGAGGCGTTCTTCGCGGACTTCGCGAGGGCGATGGTGAAGATGGGGAACATACGCCCGCCGCAGT
GGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27910.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis