Browse Element(s) Details


OsAffx.27910.1.S1_at

Description tigr:9634.m03090
TID=OsAffx.27910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3298011/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32930Os.23748.1.A1_at4/116+19180368..19181688hypothetical protein
LOC_Os06g32944Os.41074.1.S1_at11/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.9060.1.S1_at8/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.23696.1.S1_x_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.20956.1.S1_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32960OsAffx.27910.2.S1_x_at11/116+19193461..19194512Peroxidase family protein
LOC_Os06g32970OsAffx.15707.1.S1_at11/116+19194777..19195493Harpin-induced protein 1 containing protein
LOC_Os06g32970OsAffx.15707.1.S1_x_at11/116+19194777..19195493Harpin-induced protein 1 containing protein
LOC_Os06g32980OsAffx.27910.1.S1_at11/116+19198632..19199718Peroxidase family protein
LOC_Os06g32990Os.5905.1.S1_at11/116+19204574..19206122Peroxidase family protein, expressed
LOC_Os06g33000Os.46306.1.S1_x_at2/116+19207856..19210951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33010NANA6+19214534..19216507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33020NANA6+19216753..19221273retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27910.1.S1_at--1097--3931Chr06:19199123..19199147 (25 bp)
CGGCAAGCCAGCAAAGCGGTCGCCG
LOC_Os06g32980
OsAffx.27910.1.S1_at--805--9871Chr06:19198958..19198982 (25 bp)
TACAGGGACCGCGTCTATGGCGACC
LOC_Os06g32980
OsAffx.27910.1.S1_at--1068--4631Chr06:19198948..19198972 (25 bp)
GCGTCTATGGCGACCACAATATCGA
LOC_Os06g32980
OsAffx.27910.1.S1_at--617--10091Chr06:19198943..19198967 (25 bp)
TATGGCGACCACAATATCGACCCCT
LOC_Os06g32980
OsAffx.27910.1.S1_at--303--6231Chr06:19198848..19198872 (25 bp)
GATGAGGTTCGACAACAAATACTAC
LOC_Os06g32980
OsAffx.27910.1.S1_at--41--4091Chr06:19198839..19198863 (25 bp)
CGACAACAAATACTACCAGGACCTG
LOC_Os06g32980
OsAffx.27910.1.S1_at--1005--951Chr06:19198822..19198846 (25 bp)
AGGACCTGCTCCATCGGCGCGGGCT
LOC_Os06g32980
OsAffx.27910.1.S1_at--437--3711Chr06:19198753..19198777 (25 bp)
CTAGTGAGCTTGTGGAGCTGTACGC
LOC_Os06g32980
OsAffx.27910.1.S1_at--440--1611Chr06:19198738..19198762 (25 bp)
AGCTGTACGCGAAGAGCCGTAAGGC
LOC_Os06g32980
OsAffx.27910.1.S1_at--389--5351Chr06:19198728..19198752 (25 bp)
GAAGAGCCGTAAGGCGTTCTTCGCG
LOC_Os06g32980
OsAffx.27910.1.S1_at--245--311Chr06:19198670..19198694 (25 bp)
ATACGCCCGCCGGAGTGGATTCCGG
LOC_Os06g32980
Target Sequence 
CGGCAAGCCAGCAAAGCGGTCGCCGAGGACGCCAACAACCTCCCGAACCCGAACAGCGATCTCGGCGAGCTCCTCAGGGT
GTTCGAGACGCACGGCCTCGACGCCCGCGACTTCACCGCGCTCTCCGGCGCGCACACCGTCGGCAAGGCCCACAGCTGCG
ACAACTACAGGGACCGCGTCTATGGCGACCACAATATCGACCCCTCATTCGCCGCGCTCCGCCGGCGGTCGTGCGAGCAG
GGCAGAGGCGAGGCGCCGTTCGACGAGCAGACGCCGATGAGGTTCGACAACAAATACTACCAGGACCTGCTCCATCGGCG
CGGGCTCCTCACCTCCGACCAGGAGCTCTACACCCATGGCGGGGAGGTAACTAGTGAGCTTGTGGAGCTGTACGCGAAGA
GCCGTAAGGCGTTCTTCGCGGACTTCGCGAGGGCGATGGTGAAGATGGGGGAGATACGCCCGCCGGAGTGGATTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis