Browse Element(s) Details


OsAffx.15779.1.S1_at

Description tigr:9634.m03466
TID=OsAffx.15779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3648011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36430NANA6+21390529..21391513hypothetical protein
LOC_Os06g36440NANA6+21391678..21393665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36450Os.5052.1.S1_at11/116+21396009..21398399Ferroportin1 family protein, expressed
LOC_Os06g36460OsAffx.27964.1.S1_at9/116+21399839..21400751hypothetical protein
LOC_Os06g36470Os.35344.18.S1_x_at11/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36470Os.35344.3.S1_x_at9/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36470OsAffx.22940.5.S1_x_at3/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36480OsAffx.15779.1.S1_at11/116+21413177..21420657No apical meristem protein
LOC_Os06g36490Os.16567.1.S1_at10/116+21430284..21434705UPF0326 protein hag1, putative, expressed
LOC_Os06g36500Os.46785.2.S1_x_at4/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36500OsAffx.30226.2.S1_x_at1/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36500OsAffx.442.1.S1_x_at1/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36510OsAffx.15780.1.S1_at11/116+21442597..21444965hypothetical protein
LOC_Os06g36510Os.37971.1.A1_at1/116+21442597..21444965hypothetical protein
LOC_Os06g36510OsAffx.31757.1.A1_at1/116+21442597..21444965hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15779.1.S1_at--363--8351Chr06:21416903..21416927 (25 bp)
GGCGGACCCCATAGCCAGGCTGATG
LOC_Os06g36480
OsAffx.15779.1.S1_at--39--4351Chr06:21416361..21416384 (24 bp)
CCAGGAGGATGAACGGCCACACCAA
LOC_Os06g36480
OsAffx.15779.1.S1_at--696--2311Chr06:21416331..21416355 (25 bp)
AAAGTTTGATGGGAGGTCGACCTCT
LOC_Os06g36480
OsAffx.15779.1.S1_at--8--7231Chr06:21416316..21416340 (25 bp)
GTCGACCTCTGGTTCTGGACTGGAG
LOC_Os06g36480
OsAffx.15779.1.S1_at--430--9631Chr06:21416284..21416308 (25 bp)
TCATGGGCTGCACCTCACGGAGGTC
LOC_Os06g36480
OsAffx.15779.1.S1_at--478--1471Chr06:21414515..21414539 (25 bp)
AGAATGGCAGTACCCATCCTTCTGG
LOC_Os06g36480
OsAffx.15779.1.S1_at--347--4311Chr06:21414490..21414514 (25 bp)
CCATCTGACAGCCAGGATCATCATG
LOC_Os06g36480
OsAffx.15779.1.S1_at--713--6831Chr06:21413693..21413717 (25 bp)
GTTTCTCAAGATACACATTTGCCAA
LOC_Os06g36480
OsAffx.15779.1.S1_at--1056--10271Chr06:21413297..21413321 (25 bp)
TTTGCATTCTGGCATCTTGTCAGAA
LOC_Os06g36480
OsAffx.15779.1.S1_at--356--6691Chr06:21413267..21413291 (25 bp)
GTTGCCGGAGAATTTCCCAGTGTGT
LOC_Os06g36480
OsAffx.15779.1.S1_at--914--811Chr06:21413207..21413231 (25 bp)
ATGGATGAACCTGATACTGCCCTTT
LOC_Os06g36480
Target Sequence 
GGCGGACCCCATAGCCAGGCTGATGTCGCCGCCGCCGGCTCACCAGGGCACCGTCATGCTCCGGCAGCCGGAGCCGCCGT
ATATTTACCATCACCAGGAGGATGAACGGCCACACCAACCGCGAAAGTTTGATGGGAGGTCGACCTCTGGTTCTGGACTG
GAGGAGGTGATCATGGGCTGCACCTCACGGAGGTCCAAAGGAGGGGAAACATCAGGTGGTAAGGATGGCACAGAATGGCA
GTACCCATCCTTCTGGCCATCTGACAGCCAGGATCATCATGGAGACAAAGATGATATTGAAGCAAAGCAAAAGGGAGAGA
CAGAAAAAGAAAAAGGAGAGGAAAAACAAAGTTTCTCAAGATACACATTTGCCAAGAAATATTCCATGAACAAGGAAACT
CTAAAGATTTCTAGTATTTTGCATTCTGGCATCTTGTCAGAATCGAAGTTGCCGGAGAATTTCCCAGTGTGTGTAGTGGA
GGGAGAATATGATGAGCATGGCAATGCATGGATGAACCTGATACTGCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis