Browse Element(s) Details


OsAffx.15822.1.S1_at

Description tigr:9634.m03671
TID=OsAffx.15822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3849011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38460OsAffx.15821.2.S1_at11/116+22790491..22790871hypothetical protein
LOC_Os06g38470Os.10708.2.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_a_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.28463.1.S1_x_at1/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38480Os.54381.1.S1_at11/116+22806541..22808931retrotransposon protein, putative, unclassified, expressed
LOC_Os06g38490OsAffx.15822.1.S1_at11/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38490Os.54901.1.S1_at1/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38500NANA6+22816834..22817166hypothetical protein
LOC_Os06g38510Os.18224.1.S1_at11/116+22820120..22822391Pectate lyase precursor, putative, expressed
LOC_Os06g38520OsAffx.27990.1.S1_at11/116+22823679..22825322Pectate lyase family protein
LOC_Os06g38529NANA6+22828842..22829431NA
LOC_Os06g38540Os.20602.2.S1_x_at10/116+22832940..22835114hAT family dimerisation domain containing protein
LOC_Os06g38550Os.19238.2.S1_x_at11/116+22835897..22838543expressed protein
LOC_Os06g38550Os.19238.1.S1_a_at11/116+22835897..22838543expressed protein
LOC_Os06g38550Os.19238.1.S1_at10/116+22835897..22838543expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15822.1.S1_at--99--4951Chr06:22811532..22811556 (25 bp)
GCATTGCCACCGATGTAGGATCTGC
LOC_Os06g38490
OsAffx.15822.1.S1_at--179--7971Chr06:22811549..22811573 (25 bp)
GGATCTGCAGTGGAGTATCTTCATG
LOC_Os06g38490
OsAffx.15822.1.S1_at--86--9851Chr06:22811576..22811600 (25 bp)
TACAAGCCAGTTCCAATAGTTCATT
LOC_Os06g38490
OsAffx.15822.1.S1_at--468--8531Chr06:22811662..22811686 (25 bp)
TGGACTGGCAAGGTTCACAAATCAA
LOC_Os06g38490
OsAffx.15822.1.S1_at--229--4971Chr06:22811699..22811723 (25 bp)
GCATCTCAAGTCTCATCCAGCTGGG
LOC_Os06g38490
OsAffx.15822.1.S1_at--218--3391Chr06:22811716..22811740 (25 bp)
CAGCTGGGCCGCATTTAGAGGGACC
LOC_Os06g38490
OsAffx.15822.1.S1_at--48--8891Chr06:22812038..22812062 (25 bp)
TGAGGAAGCGCTGCCTGATAGTGTA
LOC_Os06g38490
OsAffx.15822.1.S1_at--859--8091Chr06:22812074..22812098 (25 bp)
GGACCAGAATCTCATATTACCAAGG
LOC_Os06g38490
OsAffx.15822.1.S1_at--192--6031Chr06:22812108..22812132 (25 bp)
GAGATGGATCACAACACACTCCTAA
LOC_Os06g38490
OsAffx.15822.1.S1_at--644--5391Chr06:22812138..22812162 (25 bp)
GAAGCAGCACTTGCATGCATAACTT
LOC_Os06g38490
OsAffx.15822.1.S1_at--433--7611Chr06:22812172..22812196 (25 bp)
GGGTTGGTATCCTCTGTTCAAAACA
LOC_Os06g38490
Target Sequence 
GCATTGCCACCGATGTAGGATCTGCAGTGGAGTATCTTCATGATTACAAGCCAGTTCCAATAGTTCATTGTGATCTTAAG
CCTAGCAATATTCTTCTAGACAGTGATATGATGGCTCATGTGGGTGACTTTGGACTGGCAAGGTTCACAAATCAAGGAGA
TAACAATGCATCTCAAGTCTCATCCAGCTGGGCCGCATTTAGAGGGACCATTGGATATGCTGCTCCAGAATATGGAATTG
GCAATGAAGTTACTACAAGTGGAGATGTTTATAGCTATGGGATAATCTTACTAGAAATGTTTACAGGAAGAAGGCCTACC
GAACAAAATTTTGAGGAGAATACTAACCTTCACAGGTTTGTTGAGGAAGCGCTGCCTGATAGTGTAGAGGATGTTGTGGA
CCAGAATCTCATATTACCAAGGGAAGACACAGAGATGGATCACAACACACTCCTAAACAAGGAAGCAGCACTTGCATGCA
TAACTTCTATTTTGAGGGTTGGTATCCTCTGTTCAAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis